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Pcdha11 Gene Detail
Summary
  • Symbol
    Pcdha11
  • Name
    protocadherin alpha 11
  • Synonyms
    A830022B16Rik, Cnr7, Crnr7
  • Feature Type
    protein coding gene
  • IDs
    MGI:1298372
    NCBI Gene: 12942
  • Member of
    Pcdha cluster
Location & Maps
more
  • Sequence Map
    Chr18:37010858-37187657 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      176800 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.46 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PCDHA11, protocadherin alpha 11
  • Vertebrate Orthologs
    4
  • Human Ortholog
    PCDHA11, protocadherin alpha 11
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CNR7, CNRN7, CNRS7, CRNR7, PCDH-ALPHA11
  • Links
    NCBI Gene ID: 56138
    neXtProt AC: NX_Q9Y5I1

  • Chr Location
    5q31.3; chr5:140867513-141012344 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 12942 NCBI Gene Model | MGI Sequence Detail 176800 C57BL/6J ±  kb
transcript NM_009960 RefSeq | MGI Sequence Detail 5254 Not Specified  
polypeptide NP_034090 RefSeq | MGI Sequence Detail 950 Not Specified  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1188 from dbSNP Build 142
Molecular
Reagents
less
  • All nucleic 13
    Genomic 3
    cDNA 8
    Primer pair 1
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2444164
References
more
  • Summaries
    All 24
    Developmental Gene Expression 4
    Gene Ontology 2
  • Earliest
    J:48282 Kohmura N, et al., Diversity revealed by a novel family of cadherins expressed in neurons at a synaptic complex. Neuron. 1998 Jun;20(6):1137-51
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory