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Rpap3 Gene Detail
Summary
  • Symbol
    Rpap3
  • Name
    RNA polymerase II associated protein 3
  • Synonyms
    2310042P20Rik, D15Ertd682e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277218
    NCBI Gene: 71919
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr15:97675105-97705822 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      30718 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 53.54 cM, cytoband F2
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    RPAP3, RNA polymerase II associated protein 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPAP3, RNA polymerase II associated protein 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    hSpagh
  • Links
    NCBI Gene ID: 79657
    neXtProt AC: NX_Q9H6T3
    UniProt: Q9H6T3

  • Chr Location
    12q13.11; chr12:47661932-47706061 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11613
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RPAP3
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022466 Ensembl Gene Model | MGI Sequence Detail 30718 C57BL/6J ±  kb
transcript ENSMUST00000023104 Ensembl | MGI Sequence Detail 2260 Not Applicable  
polypeptide ENSMUSP00000023104 Ensembl | MGI Sequence Detail 660 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    195 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014177 RNA polymerase II-associated protein 3
  • InterPro Domains
    IPR025986 RNA-polymerase II-associated protein 3-like, C-terminal domain
    IPR011990 Tetratricopeptide-like helical domain superfamily
    IPR019734 Tetratricopeptide repeat
    IPR001440 Tetratricopeptide repeat 1
    IPR013026 Tetratricopeptide repeat-containing domain
Molecular
Reagents
less
  • All nucleic 57
    cDNA 56
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1919169
References
more
  • Summaries
    All 49
    Diseases 1
    Gene Ontology 1
    Phenotypes 26
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/15/2018
MGI 6.12
The Jackson Laboratory