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Rpap3 Gene Detail
Summary
  • Symbol
    Rpap3
  • Name
    RNA polymerase II associated protein 3
  • Synonyms
    2310042P20Rik, D15Ertd682e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277218
    NCBI Gene: 71919
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:97675097-97705822 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 53.54 cM, cytoband F2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    195 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277218
protein coding gene Chr15:97675097-97705825 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022276
protein coding gene Chr15:99344276-99375777 (-)
A/J MGP_AJ_G0022235
protein coding gene Chr15:95414119-95445434 (-)
AKR/J MGP_AKRJ_G0022210
protein coding gene Chr15:98292478-98324845 (-)
BALB/cJ MGP_BALBcJ_G0022241
protein coding gene Chr15:95639410-95671181 (-)
C3H/HeJ MGP_C3HHeJ_G0022011
protein coding gene Chr15:98371725-98402316 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022686
protein coding gene Chr15:103009133-103043589 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020212
protein coding gene Chr15:91361202-91393203 (-)
CAST/EiJ MGP_CASTEiJ_G0021533
protein coding gene Chr15:99245430-99276679 (-)
CBA/J MGP_CBAJ_G0021978
protein coding gene Chr15:106473088-106506991 (-)
DBA/2J MGP_DBA2J_G0022105
protein coding gene Chr15:94866994-94898020 (-)
FVB/NJ MGP_FVBNJ_G0022084
protein coding gene Chr15:93855292-93885929 (-)
LP/J MGP_LPJ_G0022176
protein coding gene Chr15:99449460-99483384 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022104
protein coding gene Chr15:110595093-110629088 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022701
protein coding gene Chr15:98446389-98478560 (-)
PWK/PhJ MGP_PWKPhJ_G0021274
protein coding gene Chr15:94964209-94995161 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021108
protein coding gene Chr15:98216839-98250032 (-)
WSB/EiJ MGP_WSBEiJ_G0021582
protein coding gene Chr15:98963909-98997334 (-)



Homology
more
  • Human Ortholog
    RPAP3, RNA polymerase II associated protein 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPAP3, RNA polymerase II associated protein 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    hSpagh, Tah1
  • Links
    NCBI Gene ID: 79657
    neXtProt AC: NX_Q9H6T3
    UniProt: Q9H6T3

  • Chr Location
    12q13.11; chr12:47661932-47706061 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11613
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RPAP3
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    27 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 71919 NCBI Gene Model | MGI Sequence Detail 30726 C57BL/6J ±  kb
transcript NM_028003 RefSeq | MGI Sequence Detail 2260 C57BL/6  
polypeptide Q9D706 UniProt | EBI | MGI Sequence Detail 660 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014177 RNA polymerase II-associated protein 3
  • InterPro Domains
    IPR025986 RNA-polymerase II-associated protein 3-like, C-terminal domain
    IPR011990 Tetratricopeptide-like helical domain superfamily
    IPR019734 Tetratricopeptide repeat
    IPR001440 Tetratricopeptide repeat 1
    IPR013026 Tetratricopeptide repeat-containing domain
Molecular
Reagents
less
  • All nucleic 58
    cDNA 57
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1919169
References
more
  • Summaries
    All 51
    Diseases 1
    Gene Ontology 1
    Phenotypes 27
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory