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Rpap3 Gene Detail
Summary
  • Symbol
    Rpap3
  • Name
    RNA polymerase II associated protein 3
  • Synonyms
    2310042P20Rik, D15Ertd682e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277218
    NCBI Gene: 71919
Location & Maps
more
  • Sequence Map
    Chr15:97675105-97705822 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      30718 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 53.54 cM, cytoband F2
  • Mapping Data
    4 experiments
Homology
more
  • Human Ortholog
    RPAP3, RNA polymerase II associated protein 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPAP3, RNA polymerase II associated protein 3
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 79657
    neXtProt AC: NX_Q9H6T3

  • Chr Location
    12q13.11; chr12:47661932-47706061 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 11613
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: RPAP3
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    25 phenotype references
  • All Mutations and Alleles
    16
  • Chemically induced (other)
    1
  • Gene trapped
    10
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Rpap3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022466 Ensembl Gene Model | MGI Sequence Detail 30718 C57BL/6J ±  kb
transcript ENSMUST00000023104 Ensembl | MGI Sequence Detail 2260 Not Applicable  
polypeptide ENSMUSP00000023104 Ensembl | MGI Sequence Detail 660 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    195 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014177 RNA polymerase II-associated protein 3
  • InterPro Domains
    IPR025986 RNA-polymerase II-associated protein 3-like, C-terminal domain
    IPR011990 Tetratricopeptide-like helical domain
    IPR019734 Tetratricopeptide repeat
    IPR001440 Tetratricopeptide repeat 1
    IPR013026 Tetratricopeptide repeat-containing domain
Molecular
Reagents
less
  • All nucleic 57
    cDNA 56
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1919169
References
more
  • Summaries
    All 30
    Diseases 1
    Gene Ontology 1
    Phenotypes 25
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory