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Rhox6 Gene Detail
Summary
  • Symbol
    Rhox6
  • Name
    reproductive homeobox 6
  • Synonyms
    Psx1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1202888
    NCBI Gene: 19202
  • Member of
    Rhox cluster
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:37827055-37829857 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 22.08 cM, cytoband A2-A4
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    13
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1202888
protein coding gene ChrX:37826910-37829857 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035654
protein coding gene ChrX:32831969-32834994 (-)
A/J MGP_AJ_G0035640
protein coding gene ChrX:32908761-32911841 (-)
AKR/J MGP_AKRJ_G0035556
protein coding gene ChrX:33557094-33560436 (+)
BALB/cJ MGP_BALBcJ_G0035623
protein coding gene ChrX:32589024-32597900 (-)
C3H/HeJ MGP_C3HHeJ_G0035328
protein coding gene ChrX:33162606-33165315 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036153
protein coding gene ChrX:33539948-33541793 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033005
protein coding gene ChrX:31202727-31205670 (+)
CAST/EiJ MGP_CASTEiJ_G0034618
protein coding gene ChrX:21188507-21191459 (-)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0035454
protein coding gene ChrX:32652815-32662113 (+)
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0035443
protein coding gene ChrX:34753649-34756922 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036171
protein coding gene ChrX:32765408-32771674 (+)
PWK/PhJ MGP_PWKPhJ_G0034320
protein coding gene ChrX:20690918-20712570 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 19202 NCBI Gene Model | MGI Sequence Detail 2803 C57BL/6J ±  kb
transcript NM_008955 RefSeq | MGI Sequence Detail 882 Not Specified  
polypeptide NP_032981 RefSeq | MGI Sequence Detail 227 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR001356 Homeobox domain
    IPR009057 Homeobox-like domain superfamily
Molecular
Reagents
less
  • All nucleic 28
    Genomic 1
    cDNA 22
    Primer pair 4
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2147982, MGI:2148022
References
more
  • Summaries
    All 39
    Developmental Gene Expression 17
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:46103 Han YJ, et al., Psx, a novel murine homeobox gene expressed in placenta. Gene. 1998 Jan 30;207(2):159-66
  • Latest
    J:283357 Nowotschin S, et al., The emergent landscape of the mouse gut endoderm at single-cell resolution. Nature. 2019 May;569(7756):361-367

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory