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Dsc3
Gene Detail
Symbol

Name
ID
Dsc3
desmocollin 3
MGI:1194993
Synonyms
5430426I24Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 18
11.11 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:19960930-20002097 bp, - strand
From Ensembl annotation of GRCm38

  41168 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:1462  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog

HCOP human homology predictions: DSC3
Gene Tree: Dsc3

Human
homologs
DSC3, desmocollin 3
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 1825
neXtProt AC: NX_Q14574

Human Synonyms: CDHF3, DSC, DSC1, DSC2, DSC4, HT-CP

Human Chr (Location): 18q12.1; chr18:30989365-31042815 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Homozygous null mice die before implantation. Heterozygous mice do not display any gross abnormalities and have normal epidermal development and keratinocyte differentiation.
 
Interactions
Dsc3 interacts with 322 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process cell adhesion, homophilic cell adhesion via plasma membrane adhesion molecules, ...
Component cell junction, cytoplasm, ...
Function calcium ion binding, gamma-catenin binding, ...
External Resources: FuncBase
Expression
Literature Summary: (10 records)
Data Summary: Results (77)    Tissues (74)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 6
RNA in situ 71
cDNA source data(23)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase dsc3    NEW 
Molecular
reagents
All nucleic(27) cDNA(25) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000059898 (Evidence)
Entrez Gene 13507 (Evidence)
UniGene 89935
DFCI TC1609783, TC1700417
DoTS DT.40173393, DT.91332354, DT.101205167
NIA Mouse Gene Index U144854
Consensus CDS Project CCDS37744.1
International Mouse Phenotyping Consortium Status Dsc3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000059898 Ensembl Gene Model | MGI Sequence Detail 41168 C57BL/6J ±  kb
transcript ENSMUST00000115848 Ensembl | MGI Sequence Detail 5305 Not Applicable 
polypeptide ENSMUSP00000111514 Ensembl | MGI Sequence Detail 896 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(8) UniProt(2)
Polymorphisms
RFLP(1) : SNPs within 2kb(386 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002126 Cadherin
InterPro IPR020894 Cadherin conserved site
InterPro IPR000233 Cadherin, cytoplasmic domain
InterPro IPR015919 Cadherin-like
InterPro IPR014868 Cadherin prodomain
InterPro IPR027397 Catenin binding domain
InterPro IPR009122 Desmosomal cadherin
Protein Ontology PR:000006694 desmocollin-3
References
(Earliest) J:18927 Buxton RS, et al., Mouse desmocollin (Dsc3) and desmoglein (Dsg1) genes are closely linked in the proximal region of chromosome 18. Genomics. 1994 Jun;21(3):510-6
(Latest) J:202875 Tokonzaba E, et al., Plakoglobin as a regulator of desmocollin gene expression. J Invest Dermatol. 2013 Dec;133(12):2732-40
All references(39)
Other
accession IDs
MGI:1918578

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory