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Esr2 Gene Detail
Summary
  • Symbol
    Esr2
  • Name
    estrogen receptor 2 (beta)
  • Synonyms
    ERbeta, ER beta, Estrb, oestrogen receptor beta
  • Feature Type
    protein coding gene
  • IDs
    MGI:109392
    NCBI Gene: 13983
  • Gene Overview
    MyGene.info: ESR2
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:76120419-76177259 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 33.52 cM, cytoband D1-D3
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    624 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109392
protein coding gene Chr12:76120419-76177259 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019852
protein coding gene Chr12:76196003-76262337 (-)
A/J MGP_AJ_G0019810
protein coding gene Chr12:73327848-73384976 (-)
AKR/J MGP_AKRJ_G0019785
protein coding gene Chr12:75537495-75593567 (-)
BALB/cJ MGP_BALBcJ_G0019789
protein coding gene Chr12:73784955-73851681 (-)
C3H/HeJ MGP_C3HHeJ_G0019595
protein coding gene Chr12:75998177-76062805 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020241
protein coding gene Chr12:78554065-78614367 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017859
protein coding gene Chr12:70668350-70721855 (-)
CAST/EiJ MGP_CASTEiJ_G0019146
protein coding gene Chr12:70795495-70863207 (-)
CBA/J MGP_CBAJ_G0019565
protein coding gene Chr12:81575817-81635896 (-)
DBA/2J MGP_DBA2J_G0019681
protein coding gene Chr12:73180410-73236473 (-)
FVB/NJ MGP_FVBNJ_G0019668
protein coding gene Chr12:72012299-72074732 (-)
LP/J MGP_LPJ_G0019753
protein coding gene Chr12:76188287-76247421 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019707
protein coding gene Chr12:84604491-84689926 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020277
protein coding gene Chr12:75014248-75077181 (-)
PWK/PhJ MGP_PWKPhJ_G0018912
protein coding gene Chr12:67545766-67604827 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018706
protein coding gene Chr12:69514061-69585445 (-)
WSB/EiJ MGP_WSBEiJ_G0019198
protein coding gene Chr12:75622503-75688293 (-)



Homology
more
  • Human Ortholog
    ESR2, estrogen receptor 2
  • Vertebrate Orthologs
    11
  • Human Ortholog
    ESR2, estrogen receptor 2
    Orthology source: HGNC, HomoloGene
  • Synonyms
    Erb, ER-BETA, ESRB, ESR-BETA, ESTRB, NR3A2, ODG8
  • Links
    NCBI Gene ID: 2100
    neXtProt AC: NX_Q92731
    UniProt: Q92731

  • Chr Location
    14q23.2-q23.3; chr14:64226712-64338631 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 1100
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;2 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ESR2
  • Protein SuperFamily
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    143 phenotypes from 7 alleles in 10 genetic backgrounds
    68 phenotypes from multigenic genotypes
    1 images
    228 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit neural, behavior, glucose homeostasis, sex-specific nociception, cardiac, and ion channel abnormalities and myeloproliferative disorders. Females are sterile/subfertile with granulosa cell defects; males show prostate hyperplasia.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
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    Sequences &
    Gene Models
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    Representative SequencesLengthStrain/SpeciesFlank
    genomic 13983 NCBI Gene Model | MGI Sequence Detail 56841 C57BL/6J ±  kb
    transcript NM_207707 RefSeq | MGI Sequence Detail 3362 C57BL/6  
    polypeptide O08537 UniProt | EBI | MGI Sequence Detail 530 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • InterPro Domains
      IPR028355 Estrogen receptor beta/gamma
      IPR021064 Estrogen receptor beta, N-terminal
      IPR001723 Nuclear hormone receptor
      IPR000536 Nuclear hormone receptor, ligand-binding domain
      IPR035500 Nuclear hormone receptor-like domain superfamily
      IPR024178 Oestrogen receptor/oestrogen-related receptor
      IPR013088 Zinc finger, NHR/GATA-type
      IPR001628 Zinc finger, nuclear hormone receptor-type
    Molecular
    Reagents
    less
    • All nucleic 20
      cDNA 14
      Primer pair 4
      Other 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-38437
    References
    more
    • Summaries
      All 373
      Developmental Gene Expression 30
      Gene Ontology 18
      Phenotypes 228
    • Earliest
      J:38765 Chang PW, et al., Isolation, characterization, and chromosomal mapping of a novel cDNA clone encoding human selenium binding protein. J Cell Biochem. 1997 Feb;64(2):217-24
    • Latest
      J:266512 Berkel S, et al., Sex Hormones Regulate SHANK Expression. Front Mol Neurosci. 2018;11:337

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    12/04/2018
    MGI 6.13
    The Jackson Laboratory