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Trim28 Gene Detail
Summary
  • Symbol
    Trim28
  • Name
    tripartite motif-containing 28
  • Synonyms
    KAP-1, KRIP-1, MommeD9, Tif1b
  • Feature Type
    protein coding gene
  • IDs
    MGI:109274
    NCBI Gene: 21849
  • Gene Overview
    MyGene.info: TRIM28
  • Alliance
  • Transcription Start Sites
    18 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:13024152-13031032 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 7.73 cM, cytoband A2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109274
protein coding gene Chr7:12999114-13031035 (.)
129S1/SvImJ MGP_129S1SvImJ_G0031662
protein coding gene Chr7:10432795-10439683 (+)
A/J MGP_AJ_G0031635
protein coding gene Chr7:10272474-10279338 (+)
AKR/J MGP_AKRJ_G0031558
protein coding gene Chr7:10499948-10506838 (+)
BALB/cJ MGP_BALBcJ_G0031640
protein coding gene Chr7:10386955-10393843 (+)
C3H/HeJ MGP_C3HHeJ_G0031362
protein coding gene Chr7:10606516-10613322 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032104
protein coding gene Chr7:10962419-10969386 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029198
protein coding gene Chr7:11870063-11877240 (+)
CAST/EiJ MGP_CASTEiJ_G0030720
protein coding gene Chr7:8161263-8168132 (+)
CBA/J MGP_CBAJ_G0031319
protein coding gene Chr7:11182289-11189140 (+)
DBA/2J MGP_DBA2J_G0031477
protein coding gene Chr7:10154950-10161838 (+)
FVB/NJ MGP_FVBNJ_G0031433
protein coding gene Chr7:10152735-10159618 (+)
LP/J MGP_LPJ_G0031564
protein coding gene Chr7:10517319-10524207 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031468
protein coding gene Chr7:11267887-11274758 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032134
protein coding gene Chr7:10287710-10294594 (+)
PWK/PhJ MGP_PWKPhJ_G0030448
protein coding gene Chr7:8638949-8645813 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030274
protein coding gene Chr7:6399757-6406628 (+)
WSB/EiJ MGP_WSBEiJ_G0030815
protein coding gene Chr7:10318558-10325438 (+)



Homology
more
  • Human Ortholog
    TRIM28, tripartite motif containing 28
  • Vertebrate Orthologs
    7
  • Human Ortholog
    TRIM28, tripartite motif containing 28
    Orthology source: HomoloGene, HGNC
  • Synonyms
    KAP1, PPP1R157, RNF96, TF1B, TIF1B
  • Links
    NCBI Gene ID: 10155
    neXtProt AC: NX_Q13263
    UniProt: Q13263

  • Chr Location
    19q13.43; chr19:58544469-58550715 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    36 phenotypes from 6 alleles in 7 genetic backgrounds
    2 phenotypes from multigenic genotypes
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygotes for a targeted disruption of this gene develop normally until the blastocyst stage and undergo uterine implantation, but become arrested at the early egg-cylinder stage, fail to gastrulate, and are completely resorbed by E8.5.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 21849 NCBI Gene Model | MGI Sequence Detail 6881 C57BL/6J ±  kb
    transcript NM_011588 RefSeq | MGI Sequence Detail 3255 C57BL/6  
    polypeptide Q62318 UniProt | EBI | MGI Sequence Detail 834 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 26
      Genomic 1
      cDNA 22
      Primer pair 2
      Other 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGD-MRK-38319, MGI:2138086, MGI:3821594
    References
    more
    • Summaries
      All 106
      Developmental Gene Expression 23
      Gene Ontology 26
      Phenotypes 29
    • Earliest
      J:28008 Harrison SM, et al., Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Development. 1995 Aug;121(8):2479-89
    • Latest
      J:264191 Rousseaux MW, et al., Depleting Trim28 in adult mice is well tolerated and reduces levels of alpha-synuclein and tau. Elife. 2018 Jun 4;7

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory