About   Help   FAQ
Fgf13
Gene Detail
Symbol

Name
ID
Fgf13
fibroblast growth factor 13
MGI:109178
Synonyms
Fhf2
Feature Type
protein coding gene
Genetic Map
Chromosome X
33.31 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
ChrX:59062145-59568071 bp, - strand
From VEGA annotation of GRCm38

  505927 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3036  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: FGF13
Gene Tree: Fgf13

Human
homologs
FGF13, fibroblast growth factor 13
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 2258
neXtProt AC: NX_Q92913

Human Synonyms: FGF-13, FGF2, FHF2, FHF-2

Human Chr (Location): Xq26.3; chrX:138631573-139222889 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
 
Mice homozygous for a floxed allele activated in neurons or globally exhibit impaired neuronal polarization and migration, impaired spatial learning and memory, impaired object recognition, hyperactivity, increased anxiety- and depression-related behaviors and abnormal cerebral cortex.
 
Interactions
Fgf13 interacts with 280 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (40 annotations)
Process activation of protein kinase activity, cerebral cortex cell migration, ...
Component axon, cell projection, ...
Function beta-tubulin binding, growth factor activity, ...
External Resources: FuncBase
Expression
Literature Summary: (19 records)
Data Summary: Results (159)    Tissues (139)    Images (33)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 142
RT-PCR 17
cDNA source data(23)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: GEISHA FGF13 ; Xenbase fgf13 ; ZFIN fgf13a, fgf13b    NEW 
Molecular
reagents
All nucleic(31) Genomic(1) cDNA(23) Primer pair(7)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000018392 (Evidence)
Ensembl Gene Model ENSMUSG00000031137 (Evidence)
Entrez Gene 14168 (Evidence)
UniGene 7995
DFCI TC1583460, TC1636277, TC1667428
DoTS DT.97354817, DT.60105189, DT.111022811, DT.111022807
NIA Mouse Gene Index U039401
Consensus CDS Project CCDS30157.1, CCDS72383.1
International Mouse Phenotyping Consortium Status Fgf13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018392 VEGA Gene Model | MGI Sequence Detail 505927 C57BL/6J ±  kb
transcript OTTMUST00000044387 VEGA | MGI Sequence Detail 2499 Not Applicable 
polypeptide OTTMUSP00000019940 VEGA | MGI Sequence Detail 245 Not Applicable 

For the selected sequences
All sequences(72) RefSeq(16) UniProt(6)
Polymorphisms
RFLP(1) : SNPs within 2kb(1711 from dbSNP Build 137)    SNPs within 2kb including multiple locations(1717)
Protein-related
information
ResourceIDDescription
InterPro IPR008996 Cytokine, IL-1-like
InterPro IPR002209 Heparin-binding growth factor/Fibroblast growth factor
Protein Ontology PR:000007483 fibroblast growth factor 13
References
(Earliest) J:41070 Smallwood PM, et al., Fibroblast growth factor (FGF) homologous factors: new members of the FGF family implicated in nervous system development. Proc Natl Acad Sci U S A. 1996 Sep 3;93(18):9850-7
(Latest) J:213387 Hennessey JA, et al., Fibroblast growth factor homologous factors modulate cardiac calcium channels. Circ Res. 2013 Aug 2;113(4):381-8
All references(47)
Other
accession IDs
MGD-MRK-38222

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/30/2015
MGI 5.22
The Jackson Laboratory