About   Help   FAQ
Ifna9 Gene Detail
Summary
  • Symbol
    Ifna9
  • Name
    interferon alpha 9
  • Synonyms
    Ifa9
  • Feature Type
    protein coding gene
  • IDs
    MGI:107659
    NCBI Gene: 15972
  • Member of
    Ifna cluster
  • Gene Overview
    MyGene.info: IFNA4
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr4:88591813-88592385 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 42.01 cM
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107659
protein coding gene Chr4:88591813-88592385 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028424
protein coding gene Chr4:88460044-88460616 (-)
A/J MGP_AJ_G0028385
protein coding gene Chr4:85378001-85378573 (-)
AKR/J MGP_AKRJ_G0028334
protein coding gene Chr4:87486849-87487421 (-)
BALB/cJ MGP_BALBcJ_G0028405
protein coding gene Chr4:85584883-85585455 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0028844
protein coding gene Chr4:91848979-91849551 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026144
protein coding gene Chr4:81383580-81384152 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0028090
protein coding gene Chr4:94673167-94673739 (-)
DBA/2J MGP_DBA2J_G0028238
protein coding gene Chr4:85138604-85139176 (-)
FVB/NJ MGP_FVBNJ_G0028203
protein coding gene Chr4:84086956-84087528 (-)
LP/J MGP_LPJ_G0028338
protein coding gene Chr4:88821163-88821735 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028233
protein coding gene Chr4:99669538-99670110 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028881
protein coding gene Chr4:87625879-87626451 (-)
PWK/PhJ MGP_PWKPhJ_G0027283
protein coding gene Chr4:83456176-83456748 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0027636
protein coding gene Chr4:87809953-87810669 (-)



Homology
more
  • Human Ortholog
    IFNA4, interferon alpha 4
  • Vertebrate Orthologs
    25
  • Human Ortholog
    IFNA4, interferon alpha 4
    Orthology source: HomoloGene
  • Synonyms
    IFN-alpha4a, INFA4
  • Links
    NCBI Gene ID: 3441
    neXtProt AC: NX_P05014
    UniProt: P05014

  • Chr Location
    9p21.3; chr9:21186618-21187599 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 15972 NCBI Gene Model | MGI Sequence Detail 573 C57BL/6J ±  kb
transcript NM_010507 RefSeq | MGI Sequence Detail 573 BALB/c  
polypeptide P09235 UniProt | EBI | MGI Sequence Detail 190 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    Genomic 2
    cDNA 1
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-11210, MGD-MRK-36234
References
more
  • Summaries
    All 25
    Gene Ontology 4
    Phenotypes 4
  • Earliest
    J:8428 Seif I, et al., Structure and expression of a new murine interferon-alpha gene: MuIFN-alpha I9. Gene. 1986;43(1-2):111-21
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/08/2019
MGI 6.14
The Jackson Laboratory