About   Help   FAQ
Fyco1
Gene Detail
 Symbol
Name
ID
Fyco1
FYVE and coiled-coil domain containing 1
MGI:107277
Synonyms 2810409M01Rik, Mem2, ZFYVE7
Feature Type protein coding gene
Genetic Map
Chromosome 9
74.52 cM, cytoband F
Detailed Genetic Map ± 1 cM


Mapping data(8)
Sequence Map
Chr9:123789886-123851886 bp, - strand
From VEGA annotation of GRCm38

  62001 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11561  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Fyco1

Human
homologs
Human Homolog FYCO1, FYVE and coiled-coil domain containing 1
NCBI Gene ID 79443
neXtProt AC  NX_Q9BQS8
Human Synonyms  CATC2, CTRCT18, RUFY3, ZFYVE7
Human Chr (Location)  3p21.31; chr3:45917899-45995824 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human FYCO1
Alleles
and
phenotypes
All alleles(2) : Gene trapped(2)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process plus-end-directed vesicle transport along microtubule, transport
Component autophagic vacuole, cytoplasmic vesicle, ...
Function metal ion binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (45)    Tissues (31)    Images (12)
Theiler Stages: 1, 2, 3, 4, 23, 28
Assay TypeResults
RNA in situ 38
RT-PCR 7
cDNA source data(67)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(70) cDNA(69) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000044623 (Evidence)
Ensembl Gene ModelENSMUSG00000025241 (Evidence)
Entrez Gene17281 (Evidence)
UniGene252941
DFCITC1585441, TC1624764, TC1655583
DoTSDT.103559949, DT.488945, DT.55259151, DT.99852426
NIA Mouse Gene IndexU031481
Consensus CDS ProjectCCDS40819.1
International Mouse Knockout Project StatusFyco1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044623 VEGA Gene Model | MGI Sequence Detail 62001 C57BL/6J ±  kb
transcript OTTMUST00000117392 VEGA | MGI Sequence Detail 7468 Not Applicable 
polypeptide OTTMUSP00000065657 VEGA | MGI Sequence Detail 1437 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(4) UniProt(1)
Polymorphisms PCR(1) : SNPs within 2kb(1140 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009038 GOLD
InterPro IPR004012 RUN
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR017455 Zinc finger, FYVE-related
InterPro IPR000306 Zinc finger, FYVE-type
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000029502 FYVE and coiled-coil domain-containing protein 1
References (Earliest) J:40042 Heyer BS, et al., New member of the Snf1/AMPK kinase family, Melk, is expressed in the mouse egg and preimplantation embryo. Mol Reprod Dev. 1997 Jun;47(2):148-56
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)
Other
accession IDs
MGD-MRK-35742, MGI:1917454

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
04/08/2014
MGI 5.17
The Jackson Laboratory