About   Help   FAQ
Zic1 Gene Detail
Summary
  • Symbol
    Zic1
  • Name
    zinc finger protein of the cerebellum 1
  • Synonyms
    odd-paired homolog
  • Feature Type
    protein coding gene
  • IDs
    MGI:106683
    NCBI Gene: 22771
  • Gene Overview
    MyGene.info: ZIC1
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:91358058-91365810 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 48.26 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106683
protein coding gene Chr9:91358058-91365826 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035123
protein coding gene Chr9:92371694-92380776 (-)
A/J MGP_AJ_G0035104
protein coding gene Chr9:89162935-89170623 (-)
AKR/J MGP_AKRJ_G0035036
protein coding gene Chr9:91231268-91238947 (-)
BALB/cJ MGP_BALBcJ_G0035097
protein coding gene Chr9:88788668-88796133 (-)
C3H/HeJ MGP_C3HHeJ_G0034807
protein coding gene Chr9:91708289-91715916 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035617
protein coding gene Chr9:94938356-94946575 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032520
protein coding gene Chr9:87234428-87242181 (-)
CAST/EiJ MGP_CASTEiJ_G0034119
protein coding gene Chr9:91462418-91471906 (-)
CBA/J MGP_CBAJ_G0034775
protein coding gene Chr9:98204442-98212151 (-)
DBA/2J MGP_DBA2J_G0034937
protein coding gene Chr9:88686408-88694175 (-)
FVB/NJ MGP_FVBNJ_G0034885
protein coding gene Chr9:87667864-87675509 (-)
LP/J MGP_LPJ_G0035016
protein coding gene Chr9:92587132-92595888 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034924
protein coding gene Chr9:100002939-100010441 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035637
protein coding gene Chr9:91488875-91496511 (-)
PWK/PhJ MGP_PWKPhJ_G0033826
protein coding gene Chr9:88848873-88857006 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033661
protein coding gene Chr9:91522711-91530430 (-)
WSB/EiJ MGP_WSBEiJ_G0034239
protein coding gene Chr9:91382821-91391069 (-)



Homology
more
  • Human Ortholog
    ZIC1, Zic family member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    ZIC1, Zic family member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CRS6, ZIC, ZNF201
  • Links
    NCBI Gene ID: 7545
    neXtProt AC: NX_Q15915
    UniProt: Q15915

  • Chr Location
    3q24; chr3:147409394-147416719 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2562
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: ZIC1
  • Gene Tree
Human Diseases
more
  • Diseases
    2 with Zic1 mouse models

Human Disease Mouse Models
      
IDs
View 1 model
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotypes from 2 alleles in 4 genetic backgrounds
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous mutants show cerebellar hypoplasia with a missing lobule of the anterior lobe. Newborn pups suckle poorly. 50% die within one day of birth and almost all die within 3 weeks; longer survivors show marked ataxia and exhibit tonic convulsions.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000032368 Ensembl Gene Model | MGI Sequence Detail 7753 C57BL/6J ±  kb
    transcript ENSMUST00000034927 Ensembl | MGI Sequence Detail 5606 Not Applicable  
    polypeptide ENSMUSP00000034927 Ensembl | MGI Sequence Detail 447 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 32
      Genomic 2
      cDNA 20
      Primer pair 8
      Other 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-35142
    References
    more
    • Summaries
      All 135
      Developmental Gene Expression 91
      Diseases 2
      Gene Ontology 15
      Phenotypes 15
    • Earliest
      J:31270 Aruga J, et al., A novel zinc finger protein, zic, is involved in neurogenesis, especially in the cell lineage of cerebellar granule cells. J Neurochem. 1994 Nov;63(5):1880-90
    • Latest
      J:265501 Kim H, et al., Ablation of Ezh2 in neural crest cells leads to aberrant enteric nervous system development in mice. PLoS One. 2018;13(8):e0203391

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.
    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory