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Srsf9 Gene Detail
Summary
  • Symbol
    Srsf9
  • Name
    serine/arginine-rich splicing factor 9
  • Synonyms
    2610029M16Rik, Sfrs9, SRp30c
  • Feature Type
    protein coding gene
  • IDs
    MGI:104896
    NCBI Gene: 108014
  • Gene Overview
    MyGene.info: SRSF9
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:115327177-115333080 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 56.05 cM, cytoband F
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    31 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104896
protein coding gene Chr5:115327165-115333080 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029965
protein coding gene Chr5:118175923-118184032 (+)
A/J MGP_AJ_G0029930
protein coding gene Chr5:113492145-113498126 (+)
AKR/J MGP_AKRJ_G0029868
protein coding gene Chr5:117132637-117139620 (+)
BALB/cJ MGP_BALBcJ_G0029941
protein coding gene Chr5:114888771-114894666 (+)
C3H/HeJ MGP_C3HHeJ_G0029660
protein coding gene Chr5:117631650-117638748 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030395
protein coding gene Chr5:122741740-122747919 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027622
protein coding gene Chr5:108268088-108273922 (+)
CAST/EiJ MGP_CASTEiJ_G0029069
protein coding gene Chr5:116555483-116562264 (+)
CBA/J MGP_CBAJ_G0029628
protein coding gene Chr5:127458254-127464098 (+)
DBA/2J MGP_DBA2J_G0029778
protein coding gene Chr5:113566048-113571933 (+)
FVB/NJ MGP_FVBNJ_G0029734
protein coding gene Chr5:112384308-112390160 (+)
LP/J MGP_LPJ_G0029866
protein coding gene Chr5:118751296-118758340 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029765
protein coding gene Chr5:131772055-131779096 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030436
protein coding gene Chr5:116591714-116598808 (+)
PWK/PhJ MGP_PWKPhJ_G0028782
protein coding gene Chr5:112227975-112234128 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028620
protein coding gene Chr5:114150431-114156321 (+)
WSB/EiJ MGP_WSBEiJ_G0029144
protein coding gene Chr5:117190030-117197266 (+)



Homology
more
  • Human Ortholog
    SRSF9, serine and arginine rich splicing factor 9
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SRSF9, serine and arginine rich splicing factor 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SFRS9, SRp30c
  • Links
    NCBI Gene ID: 8683
    neXtProt AC: NX_Q13242
    UniProt: Q13242

  • Chr Location
    12q24.31; chr12:120461668-120469755 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    13
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    7
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Srsf9
  • Incidental Mutations
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029538 Ensembl Gene Model | MGI Sequence Detail 5904 C57BL/6J ±  kb
transcript ENSMUST00000031513 Ensembl | MGI Sequence Detail 1162 Not Applicable  
polypeptide ENSMUSP00000031513 Ensembl | MGI Sequence Detail 222 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 65
    Genomic 1
    cDNA 63
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-29049, MGI:1913703
References
more
  • Summaries
    All 43
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:206632 Roberts JM, et al., Splicing factor TRA2B is required for neural progenitor survival. J Comp Neurol. 2014 Feb 1;522(2):372-92

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory