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Lta Gene Detail
Summary
  • Symbol
    Lta
  • Name
    lymphotoxin A
  • Synonyms
    hlb382, LT, LT-[a], LT[a], LTalpha, LT-alpha, Ltx, lymphotoxin, lymphotoxin alpha, Tnfb, TNF beta, TNF-beta, Tnfsf1b
  • Feature Type
    protein coding gene
  • IDs
    MGI:104797
    NCBI Gene: 16992
  • Gene Overview
    MyGene.info: LTA
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35203165-35205351 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.59 cM
  • Mapping Data
    28 experiments
  • Sequence Tags
Strain
Comparison
more
  • Strain Annotations
    18
  • PCR
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104797
protein coding gene Chr17:35203165-35205632 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023629
protein coding gene Chr17:35353040-35355172 (-)
A/J MGP_AJ_G0023588
protein coding gene Chr17:34173495-34175625 (-)
AKR/J MGP_AKRJ_G0023557
protein coding gene Chr17:34654457-34656591 (-)
BALB/cJ MGP_BALBcJ_G0023595
protein coding gene Chr17:34317769-34319917 (-)
C3H/HeJ MGP_C3HHeJ_G0023356
protein coding gene Chr17:35059789-35061949 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024034
protein coding gene Chr17:36697569-36699701 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021515
protein coding gene Chr17:31945003-31946500 (-)
CAST/EiJ MGP_CASTEiJ_G0022852
protein coding gene Chr17:35062105-35064221 (-)
CBA/J MGP_CBAJ_G0023334
protein coding gene Chr17:38210274-38212418 (-)
DBA/2J MGP_DBA2J_G0023462
protein coding gene Chr17:33500837-33502983 (-)
FVB/NJ MGP_FVBNJ_G0023429
protein coding gene Chr17:33342544-33344682 (-)
LP/J MGP_LPJ_G0023539
protein coding gene Chr17:35681748-35683862 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023451
protein coding gene Chr17:37138473-37140625 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024079
protein coding gene Chr17:34883068-34885214 (-)
PWK/PhJ MGP_PWKPhJ_G0022600
protein coding gene Chr17:32338163-32340364 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022420
protein coding gene Chr17:32890239-32892380 (-)
WSB/EiJ MGP_WSBEiJ_G0022916
protein coding gene Chr17:35006242-35008363 (-)



Homology
more
  • Human Ortholog
    LTA, lymphotoxin alpha
  • Vertebrate Orthologs
    8
  • Human Ortholog
    LTA, lymphotoxin alpha
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LT, TNFB, TNFSF1, TNLG1E
  • Links
    NCBI Gene ID: 4049
    neXtProt AC: NX_P01374
    UniProt: P01374

  • Chr Location
    6p21.33; chr6:31560550-31574324 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    3 with human LTA associations

Human Disease Mouse Models
      
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    91 phenotypes from 11 alleles in 22 genetic backgrounds
    13 phenotypes from multigenic genotypes
    2 images
    271 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygotes for targeted null mutations exhibit absence of lymph nodes, Peyer's patches, and splenic germinal centers, impaired class switching and NK cell recruitment, and greater susceptibility to Mycobacterium bovis, influenza A, and Toxoplasma gondii.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000024402 Ensembl Gene Model | MGI Sequence Detail 2187 C57BL/6J ±  kb
    transcript ENSMUST00000025266 Ensembl | MGI Sequence Detail 1383 Not Applicable  
    polypeptide ENSMUSP00000025266 Ensembl | MGI Sequence Detail 202 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 59
      Genomic 42
      cDNA 8
      Primer pair 8
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-11928, MGD-MRK-15153, MGD-MRK-28089, MGI:3575121
    References
    more
    • Summaries
      All 385
      Developmental Gene Expression 11
      Gene Ontology 13
      Phenotypes 271
    • Earliest
      J:30783 Shacks SJ, et al., Studies on in vitro models of cellular immunity: the role of T and B cells in the secretion of lymphotoxin. Cell Immunol. 1973 May;7(2):313-21
    • Latest
      J:265728 Lopes N, et al., Lymphotoxin alpha fine-tunes T cell clonal deletion by regulating thymic entry of antigen-presenting cells. Nat Commun. 2018 Mar 28;9(1):1262

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory