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Pcdh1 Gene Detail
Summary
  • Symbol
    Pcdh1
  • Name
    protocadherin 1
  • Synonyms
    2010005A06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:104692
    NCBI Gene: 75599
  • Gene Overview
    MyGene.info: PCDH1
Location & Maps
more
  • Sequence Map
    Chr18:38185914-38212053 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      26140 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 20.08 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PCDH1, protocadherin 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PCDH1, protocadherin 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PC42, PCDH42
  • Links
    NCBI Gene ID: 5097
    neXtProt AC: NX_Q08174

  • Chr Location
    5q31.3; chr5:141852319-141878813 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033463 VEGA Gene Model | MGI Sequence Detail 26140 C57BL/6J ±  kb
transcript OTTMUST00000084083 VEGA | MGI Sequence Detail 3889 Not Applicable  
polypeptide OTTMUSP00000045258 VEGA | MGI Sequence Detail 1077 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    95 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 6
    cDNA 4
    Primer pair 2

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-27055, MGI:1922849, MGI:2147243
References
more
  • Summaries
    All 24
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:29362 Sago H, et al., Cloning, expression, and chromosomal localization of a novel cadherin-related protein, protocadherin-3. Genomics. 1995 Oct 10;29(3):631-40
  • Latest
    J:222248 Fossat N, et al., Context-specific function of the LIM homeobox 1 transcription factor in head formation of the mouse embryo. Development. 2015 Jun 1;142(11):2069-79

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory