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Clec3b
Gene Detail
Symbol

Name
ID
Clec3b
C-type lectin domain family 3, member b
MGI:104540
Synonyms
Tna
Feature Type
protein coding gene
Genetic Map
Chromosome 9
73.91 cM, cytoband F1-F3
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr9:123150946-123157430 bp, + strand
From Ensembl annotation of GRCm38

  6485 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:31145  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: CLEC3B
Gene Tree: Clec3b

Human
homologs
CLEC3B, C-type lectin domain family 3, member B
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 7123
neXtProt AC: NX_P05452

Human Synonyms: TN, TNA

Human Chr (Location): 3p22-p21.3; chr3:45026267-45036071 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Human Diseases Modeled in Mice Using Clec3b (1)    Mutations Annotated to Human Diseases (1)   
Interactions
Clec3b interacts with 26 markers (Mir125a, Mir125b-1, Mir125b-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (17 annotations)
Process bone mineralization, positive regulation of plasminogen activation, ...
Component cytoplasm, extracellular exosome, ...
Function calcium ion binding, carbohydrate binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (31)    Tissues (20)    Images (17)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 8
Northern blot 11
Western blot 3
RT-PCR 9
cDNA source data(12)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: GEISHA CLEC3B ; Xenbase clec3b    NEW 
Molecular
reagents
All nucleic(14) Genomic(1) cDNA(12) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000025784 (Evidence)
Entrez Gene 21922 (Evidence)
UniGene 34588
DFCI TC1584741
DoTS DT.97396516, DT.110589862
NIA Mouse Gene Index U011193
Consensus CDS Project CCDS23656.1
International Mouse Phenotyping Consortium Status Clec3b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025784 Ensembl Gene Model | MGI Sequence Detail 6485 C57BL/6J ±  kb
transcript ENSMUST00000026890 Ensembl | MGI Sequence Detail 990 Not Applicable 
polypeptide ENSMUSP00000026890 Ensembl | MGI Sequence Detail 202 Not Applicable 

For the selected sequences
All sequences(17) RefSeq(2) UniProt(2)
Polymorphisms
RFLP(1) : SNPs within 2kb(73 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001304 C-type lectin
InterPro IPR018378 C-type lectin, conserved site
InterPro IPR016187 C-type lectin fold
InterPro IPR016186 C-type lectin-like
Protein Ontology PR:000005567 tetranectin
References
(Earliest) J:190010 Wewer UM, et al., A potential role for tetranectin in mineralization during osteogenesis. J Cell Biol. 1994 Dec;127(6 Pt 1):1767-75
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Disease annotation references (1)
Other
accession IDs
MGD-MRK-25972

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory