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Cox6a1
Gene Detail
Symbol

Name
ID
Cox6a1
cytochrome c oxidase subunit VIa polypeptide 1
MGI:103099
Synonyms
subunit VIaL (liver-type), VIaL
Feature Type
protein coding gene
Genetic Map
Chromosome 5
56.06 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr5:115345642-115348981 bp, - strand
From VEGA annotation of GRCm38

  3340 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3219  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: COX6A1
Protein SuperFamily: cytochrome-c oxidase, subunit VIa
Gene Tree: Cox6a1

Human
homologs
COX6A1, cytochrome c oxidase subunit VIa polypeptide 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 1337
neXtProt AC: NX_P12074

Human Synonyms: CMTRID, COX6A, COX6AL

Human Chr (Location): 12q24.2; chr12:120438090-120440742 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human COX6A1

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(5) Targeted(1)
Interactions
Cox6a1 interacts with 33 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Component membrane, mitochondrial inner membrane, ...
Function cytochrome-c oxidase activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (12)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(359)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase cox6a1 ; ZFIN cox6a1    NEW 
Molecular
reagents
All nucleic(361) cDNA(360) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000014656 (Evidence)
Ensembl Gene Model ENSMUSG00000041697 (Evidence)
Entrez Gene 12861 (Evidence)
UniGene 43415
DFCI TC1573244
DoTS DT.101369123, DT.101145707, DT.101369275
NIA Mouse Gene Index U026629
Consensus CDS Project CCDS19590.1
International Mouse Phenotyping Consortium Status Cox6a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000014656 VEGA Gene Model | MGI Sequence Detail 3340 C57BL/6J ±  kb
transcript OTTMUST00000034761 VEGA | MGI Sequence Detail 571 Not Applicable 
polypeptide OTTMUSP00000015557 VEGA | MGI Sequence Detail 112 Not Applicable 

For the selected sequences
All sequences(29) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(27 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001349 Cytochrome c oxidase, subunit VIa
InterPro IPR018507 Cytochrome c oxidase, subunit VIa, conserved site
Protein Ontology PR:000005781 cytochrome c oxidase subunit 6A1, mitochondrial
References
(Earliest) J:23130 Grossman LI, et al., Cloning, sequence analysis, and expression of a mouse cDNA encoding cytochrome c oxidase subunit VIa liver isoform. Biochim Biophys Acta. 1995 Feb 21;1260(3):361-4
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGD-MRK-23963

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory