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Zxdb Gene Detail
Summary
  • Symbol
    Zxdb
  • Name
    zinc finger, X-linked, duplicated B
  • Synonyms
    4933406P09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3694898
    NCBI Gene: 668166
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:93768175-93773793 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 41.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    6 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3694898
 protein coding gene ChrX:93768175-93773793 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035914
 protein coding gene ChrX:91156515-91161095 (+)
A/J MGP_AJ_G0035900
 protein coding gene ChrX:91305076-91308299 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0035884
 protein coding gene ChrX:89962900-89967716 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0036413
 protein coding gene ChrX:93929848-93965902 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033240
 protein coding gene ChrX:89377137-89381443 (+)
CAST/EiJ MGP_CASTEiJ_G0034878
 protein coding gene ChrX:76245315-76248542 (-)
CBA/J MGP_CBAJ_G0035567
 protein coding gene ChrX:96731933-96735485 (-)
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0035812
 protein coding gene ChrX:91971648-91976944 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035696
 protein coding gene ChrX:101005071-101012170 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036440
 protein coding gene ChrX:90851755-90856574 (+)
PWK/PhJ MGP_PWKPhJ_G0034577
 protein coding gene ChrX:73953384-73957045 (-)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    ZXDA, zinc finger X-linked duplicated A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZXDA, zinc finger X-linked duplicated A
  • Synonyms
    ZNF896
  • Links
    NCBI Gene ID: 7789
    neXtProt AC: NX_P98168
    UniProt: P98168

  • Chr Location
    Xp11.21; chrX:57905430-57910458 (-)  GRCh38
  • Human Ortholog
    ZXDB, zinc finger X-linked duplicated B
  • Synonyms
    dJ83L6.1, ZNF905
  • Links
    NCBI Gene ID: 158586
    neXtProt AC: NX_P98169
    UniProt: P98169

  • Chr Location
    Xp11.21; chrX:57592011-57597477 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    31
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 668166 NCBI Gene Model | MGI Sequence Detail 5619 C57BL/6J ±  kb
transcript NM_001081473 RefSeq | MGI Sequence Detail 5619 C57BL/6  
polypeptide A2CE44 UniProt | EBI | MGI Sequence Detail 873 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR036236 Zinc finger C2H2 superfamily
    IPR013087 Zinc finger C2H2-type
Molecular
Reagents
less
  • All nucleic 32
    cDNA 32

    Microarray probesets 4
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 4
  • Earliest
    J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory