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Nkapd1 Gene Detail
Summary
  • Symbol
    Nkapd1
  • Name
    NKAP domain containing 1
  • Synonyms
    AU019823, LOC270156
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143205
    NCBI Gene: 270156
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:50516542-50528567 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 27.75 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143205
 protein coding gene Chr9:50516540-50528764 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034783
 protein coding gene Chr9:49504536-49518542 (-)
A/J MGP_AJ_G0034764
 protein coding gene Chr9:47988886-48001645 (-)
AKR/J MGP_AKRJ_G0034692
 protein coding gene Chr9:49000548-49015780 (-)
BALB/cJ MGP_BALBcJ_G0034756
 protein coding gene Chr9:47716557-47732553 (-)
C3H/HeJ MGP_C3HHeJ_G0034466
 protein coding gene Chr9:49487991-49500008 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035276
 protein coding gene Chr9:50881192-50895963 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032189
 protein coding gene Chr9:47457155-47470500 (-)
CAST/EiJ MGP_CASTEiJ_G0033788
 protein coding gene Chr9:49436597-49452389 (-)
CBA/J MGP_CBAJ_G0034438
 protein coding gene Chr9:52694436-52708059 (-)
DBA/2J MGP_DBA2J_G0034597
 protein coding gene Chr9:47853156-47865465 (-)
FVB/NJ MGP_FVBNJ_G0034538
 protein coding gene Chr9:47070126-47082201 (-)
LP/J MGP_LPJ_G0034678
 protein coding gene Chr9:49864731-49877796 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034581
 protein coding gene Chr9:54290737-54302749 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035297
 protein coding gene Chr9:48978574-48990704 (-)
PWK/PhJ MGP_PWKPhJ_G0033493
 protein coding gene Chr9:47829987-47842220 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033328
 protein coding gene Chr9:49289792-49301777 (-)
WSB/EiJ MGP_WSBEiJ_G0033901
 protein coding gene Chr9:48985206-48999896 (-)



Homology
more
  • Human Ortholog
    NKAPD1, NKAP domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NKAPD1, NKAP domain containing 1
  • Synonyms
    C11orf57
  • Links
    NCBI Gene ID: 55216
    neXtProt AC: NX_Q6ZUT1
    UniProt: Q6ZUT1

  • Chr Location
    11q23.1; chr11:112074086-112085150 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 270156 NCBI Gene Model | MGI Sequence Detail 12026 C57BL/6J ±  kb
transcript NM_001360340 RefSeq | MGI Sequence Detail 3687 C57BL/6  
polypeptide NP_001347269 RefSeq | MGI Sequence Detail 292 C57BL/6  
For the selected sequence
Protein
Information
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  • UniProt
    5 Sequences
  • InterPro Domains
    IPR043407 Nkap domain containing 1
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 4
Other
Accession IDs
less
MGI:2685485
References
more
  • Summaries
    All 24
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory