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Lef1 Gene Detail
Summary
  • Symbol
    Lef1
  • Name
    lymphoid enhancer binding factor 1
  • Synonyms
    Lef-1, lymphoid enhancer factor 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:96770
    NCBI Gene: 16842
  • Alliance
  • Transcription Start Sites
    43 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:130904120-131018005 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 3, 60.78 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    522 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_96770
protein coding gene Chr3:130903972-131018006 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027885
protein coding gene Chr3:133893980-134018711 (+)
A/J MGP_AJ_G0027843
protein coding gene Chr3:129177308-129293757 (+)
AKR/J MGP_AKRJ_G0027808
protein coding gene Chr3:132540303-132663031 (+)
BALB/cJ MGP_BALBcJ_G0027856
protein coding gene Chr3:129033686-129148335 (+)
C3H/HeJ MGP_C3HHeJ_G0027585
protein coding gene Chr3:132950527-133068384 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028299
protein coding gene Chr3:138610345-138738392 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025637
protein coding gene Chr3:124699862-124813265 (+)
CAST/EiJ MGP_CASTEiJ_G0027041
protein coding gene Chr3:132669635-132789193 (+)
CBA/J MGP_CBAJ_G0027561
protein coding gene Chr3:143276913-143405955 (+)
DBA/2J MGP_DBA2J_G0027701
protein coding gene Chr3:128382113-128497268 (+)
FVB/NJ MGP_FVBNJ_G0027668
protein coding gene Chr3:125962051-126077310 (+)
LP/J MGP_LPJ_G0027811
protein coding gene Chr3:135371507-135493527 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027699
protein coding gene Chr3:151211238-151333291 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028357
protein coding gene Chr3:132223031-132347121 (+)
PWK/PhJ MGP_PWKPhJ_G0026765
protein coding gene Chr3:128123538-128240860 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026590
protein coding gene Chr3:130269708-130387000 (+)
WSB/EiJ MGP_WSBEiJ_G0027120
protein coding gene Chr3:132949670-133075301 (+)



Homology
more
  • Human Ortholog
    LEF1, lymphoid enhancer binding factor 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LEF1, lymphoid enhancer binding factor 1
  • Synonyms
    LEF-1, TCF10, TCF1ALPHA, TCF7L3
  • Links
    NCBI Gene ID: 51176
    neXtProt AC: NX_Q9UJU2
    UniProt: Q9UJU2

  • Chr Location
    4q25; chr4:108047545-108168956 (-)  GRCh38

Human Diseases
more
  • Diseases
    1 with human LEF1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    54 phenotypes from 5 alleles in 7 genetic backgrounds
    14 phenotypes from multigenic genotypes
    92 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele are small and die postnatally showing lack of teeth, mammary and uterine glands, whiskers, body hair, dermal-associated fat, and a dentate gyrus, as well as defects in hippocampus morphology, hair follicle development, retinal vasculature, and vascular regression.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000027985 Ensembl Gene Model | MGI Sequence Detail 113886 C57BL/6J ±  kb
    transcript ENSMUST00000029611 Ensembl | MGI Sequence Detail 3482 Not Applicable  
    polypeptide ENSMUSP00000029611 Ensembl | MGI Sequence Detail 397 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 130
      Genomic 1
      cDNA 82
      Primer pair 23
      Other 24

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-11782, MGD-MRK-11783, MGI:2139722
    References
    more
    • Summaries
      All 672
      Developmental Gene Expression 496
      Diseases 1
      Gene Ontology 57
      Phenotypes 92
    • Earliest
      J:10393 Mattei MG, et al., Chromosomal localization of the three members of the jun proto-oncogene family in mouse and man. Oncogene. 1990 Jan;5(1):151-6
    • Latest
      J:346126 Pappas MP, et al., Sall4 regulates posterior trunk mesoderm development by promoting mesodermal gene expression and repressing neural genes in the mesoderm. Development. 2024 Mar 1;151(5)

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    last database update
    04/16/2024
    MGI 6.23
    The Jackson Laboratory