Gene Expression Data
Assay Details
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Assay
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Reference:
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J:245736
Nakagawa S, et al., Malat1 is not an essential component of nuclear speckles in mice. RNA. 2012 Aug;18(8):1487-99
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Assay type:
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RNA in situ
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MGI Accession ID:
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MGI:6197084
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Gene symbol:
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Malat1
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Gene name:
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metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
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Probe:
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Malat1 probe3
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Probe preparation:
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Antisense labelled with digoxigenin RNA
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Visualized with:
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Alkaline phosphatase
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Results
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Specimen
1B E9.5:
embryonic day 9.5
(more  )
Specimen
1B E9.5:
(close  )
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Genetic Background:
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involves: C57BL/6
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Age:
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embryonic day 9.5
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Sex:
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Not Specified
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Type:
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whole mount
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| Structure |
Level |
Pattern |
Image |
Note |
| TS15: embryo |
Strong |
Ubiquitous |
1B E9.5 antisense
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Authors report expression in all cell types.
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Specimen
1B E10.5:
embryonic day 10.5
(more )
Specimen
1B E10.5:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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embryonic day 10.5
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS17: embryo |
Strong |
Ubiquitous |
1B E10.5 antisense
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Authors report expression in all cell types.
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Specimen
1C Liver:
postnatal adult
(more )
Specimen
1C Liver:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: liver |
Present |
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1C Liver
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Specimen
1C Kidney:
postnatal adult
(more )
Specimen
1C Kidney:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
1C Cardial muscle:
postnatal adult
(more )
Specimen
1C Cardial muscle:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
1C Skeletal muscle:
postnatal adult
(more )
Specimen
1C Skeletal muscle:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
1C Forestomach:
postnatal adult
(more )
Specimen
1C Forestomach:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
1C Stomach:
postnatal adult
(more )
Specimen
1C Stomach:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: stomach |
Present |
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1C Stomach
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Specimen
1C Intestine:
postnatal adult
(more )
Specimen
1C Intestine:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
1C Colon:
postnatal adult
(more )
Specimen
1C Colon:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: colon |
Present |
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1C Colon
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Specimen
1C Cerebral cortex:
postnatal adult
(more )
Specimen
1C Cerebral cortex:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: cerebral cortex |
Strong |
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1C Cerebral cortex
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Authors report highest levels of expression in brain.
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Specimen
1C Hippocampus CA1:
postnatal adult
(more )
Specimen
1C Hippocampus CA1:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: hippocampus CA1 |
Strong |
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1C Hippocampus CA1
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Authors report highest levels of expression in brain.
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Specimen
1C Hippocampus DG:
postnatal adult
(more )
Specimen
1C Hippocampus DG:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: dentate gyrus |
Strong |
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1C Hippocampus DG
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Authors report highest levels of expression in brain.
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Specimen
1C Cerebellum:
postnatal adult
(more )
Specimen
1C Cerebellum:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: cerebellum |
Strong |
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1C Cerebellum
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Authors report highest levels of expression in brain.
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Specimen
2I Forestomach WT:
postnatal adult
(more )
Specimen
2I Forestomach WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2I Intestine WT:
postnatal adult
(more )
Specimen
2I Intestine WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2I Liver WT:
postnatal adult
(more )
Specimen
2I Liver WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: liver |
Present |
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2I Liver WT
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Specimen
2I Kidney WT:
postnatal adult
(more )
Specimen
2I Kidney WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2I Heart WT:
postnatal adult
(more )
Specimen
2I Heart WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: heart |
Present |
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2I Heart WT
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Specimen
2I Forestomach KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: stomach proventricular region |
Absent |
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2I Forestomach KO
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Authors report complete loss of expression in in non-neural tissues in knock out mice.
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Specimen
2I Intestine KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: intestine |
Absent |
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2I Intestine KO
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Authors report complete loss of expression in in non-neural tissues in knock out mice.
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Specimen
2I Liver KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: liver |
Absent |
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2I Liver KO
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Authors report complete loss of expression in in non-neural tissues in knock out mice.
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Specimen
2I Kidney KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2I Heart KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: heart |
Absent |
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2I Heart KO
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Authors report complete loss of expression in in non-neural tissues in knock out mice.
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Specimen
2J Cortex WT:
postnatal adult
(more )
Specimen
2J Cortex WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J CA1 WT:
postnatal adult
(more )
Specimen
2J CA1 WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J DG WT:
postnatal adult
(more )
Specimen
2J DG WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J Hypothalamus WT:
postnatal adult
(more )
Specimen
2J Hypothalamus WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J Cerebellum WT:
postnatal adult
(more )
Specimen
2J Cerebellum WT:
(close )
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Genetic Background:
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involves: C57BL/6
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J Cortex KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: cerebral cortex |
Present |
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2J Cortex KO
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Authors report relatively high expression in cerebral cortex and hippocampal CA1 region.
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Specimen
2J CA1 KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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| Structure |
Level |
Pattern |
Image |
Note |
| TS28: hippocampus CA1 |
Present |
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2J CA1 KO
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Relatively high expression in cerebral cortex and hippocampal CA1 region.
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Specimen
2J DG:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J Hypothalamus KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Specimen
2J Cerebellum KO:
(close )
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Genetic Background:
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involves: C57BL/6 * C57BL/6NCrlj * CBA/JNCrlj
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Mutant Allele(s):
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Malat1tm1.1Shna/Malat1tm1.1Shna
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Age:
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postnatal adult
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Sex:
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Not Specified
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Type:
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section
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Analysis Tools