Exoc3l4 MGI Mouse Gene Detail - MGI:1921363 - exocyst complex component 3-like 4

Symbol

Exoc3l4
Name

exocyst complex component 3-like 4
Synonyms

1200009I06Rik, 1600013K19Rik

Feature Type

protein coding gene
IDs

MGI:1921363
NCBI Gene: 74190
Alliance

gene page
Transcription Start Sites

18 TSS

Sequence Map

Chr12:111383864-111398114 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 12, 60.98 cM, cytoband F2
Mapping Data

3 experiments

SNPs within 2kb

79 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921363	protein coding gene	Chr12:111383451-111398114 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020132	protein coding gene	Chr12:113804300-113818052 (+)
A/J	MGP_AJ_G0020088	protein coding gene	Chr12:109426495-109440253 (+)
AKR/J	MGP_AKRJ_G0020063	protein coding gene	Chr12:112561518-112574761 (+)
BALB/cJ	MGP_BALBcJ_G0020073	protein coding gene	Chr12:109843166-109856918 (+)
C3H/HeJ	MGP_C3HHeJ_G0019875	protein coding gene	Chr12:113063384-113075405 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020518	protein coding gene	Chr12:117336310-117350181 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018131	protein coding gene	Chr12:105868497-105881719 (+)
CAST/EiJ	MGP_CASTEiJ_G0019416	protein coding gene	Chr12:107900657-107914244 (+)
CBA/J	MGP_CBAJ_G0019842	protein coding gene	Chr12:121803290-121817048 (+)
DBA/2J	MGP_DBA2J_G0019959	protein coding gene	Chr12:108907992-108921750 (+)
FVB/NJ	MGP_FVBNJ_G0019944	protein coding gene	Chr12:107706446-107718829 (+)
LP/J	MGP_LPJ_G0020034	protein coding gene	Chr12:113618333-113632085 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019982	protein coding gene	Chr12:124927052-124940629 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020547	protein coding gene	Chr12:112067799-112081376 (+)
PWK/PhJ	MGP_PWKPhJ_G0019177	protein coding gene	Chr12:103545867-103559199 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018980	protein coding gene	Chr12:106229544-106243208 (+)
WSB/EiJ	MGP_WSBEiJ_G0019475	protein coding gene	Chr12:112994278-113007851 (+)

Human Ortholog

EXOC3L4, exocyst complex component 3 like 4

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

EXOC3L4, exocyst complex component 3 like 4
Synonyms

C14orf73
Links

HGNC:20120

NCBI Gene ID: 91828

neXtProt AC: NX_Q17RC7

UniProt: Q17RC7
Chr Location

14q32.32; chr14:103094174-103110559 (+) GRCh38

MGI Vertebrate Homology

Exoc3l4 stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: EXOC3L4
Gene Tree

Exoc3l4

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Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
5 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

8
Endonuclease-mediated

1
Gene trapped

5
Targeted

2
Incidental Mutations

APF
Find Mice (IMSR)

25 strains or lines available

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All GO Annotations

4
GO References

1

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

10

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

80
RefSeq

14
UniProt

8
CCDS

CCDS26177.1

Ensembl

ENSMUSG00000021280 (Evidence)
NCBI Gene

74190

			Length	Strain/Species	Flank
genomic	74190	NCBI Gene Model \| MGI Sequence Detail	14251	C57BL/6J	± kb
transcript	NM_001289487	RefSeq \| MGI Sequence Detail	3525	C57BL/6
polypeptide	Q6DIA2	UniProt \| EBI \| MGI Sequence Detail	721	Not Applicable

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UniProt

8 Sequences
Protein Ontology

PR:000032016 exocyst complex component 3-like protein 4

(term hierarchy)
InterPro Domains

IPR010326 Exocyst complex component EXOC3/Sec6

IPR042532 Exocyst complex component EXOC3/Sec6, C-terminal domain

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All nucleic 11

Genomic 1

cDNA 10

Microarray probesets 5

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MGI:1921440

Summaries

All 25

Gene Ontology 1

Phenotypes 5
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for Exoc3l4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115261	Chr12:111383885-111383901 (+)	29 bp
Tssr115262	Chr12:111383920-111383927 (+)	60 bp
Tssr115263	Chr12:111384035-111384113 (+)	210 bp
Tssr115264	Chr12:111386918-111386971 (+)	3,081 bp
Tssr115265	Chr12:111387030-111387041 (+)	3,172 bp
Tssr115266	Chr12:111387881-111387890 (+)	4,022 bp
Tssr115267	Chr12:111387897-111387919 (+)	4,044 bp
Tssr115268	Chr12:111387925-111387938 (+)	4,068 bp
Tssr115269	Chr12:111387962-111387973 (+)	4,104 bp
Tssr115270	Chr12:111387979-111387995 (+)	4,123 bp
Tssr115271	Chr12:111389547-111389567 (+)	5,693 bp
Tssr115272	Chr12:111389682-111389698 (+)	5,826 bp
Tssr115273	Chr12:111395060-111395086 (+)	11,209 bp
Tssr115274	Chr12:111395463-111395544 (+)	11,640 bp
Tssr115275	Chr12:111395566-111395577 (+)	11,708 bp
Tssr115276	Chr12:111395592-111395606 (+)	11,735 bp
Tssr115277	Chr12:111395617-111395694 (+)	11,792 bp
Tssr115278	Chr12:111395717-111395734 (+)	11,862 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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