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Tdp1 Gene Detail
Summary
  • Symbol
    Tdp1
  • Name
    tyrosyl-DNA phosphodiesterase 1
  • Synonyms
    2810481F14Rik, 4921509N21Rik, E430034L06Rik, Gm40556, SCAN1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920036
    NCBI Gene: 104884
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:99850776-99921478 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, Syntenic
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    705 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920036
 protein coding gene Chr12:99850767-99921482 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020013
 protein coding gene Chr12:101336864-101408330 (+)
A/J MGP_AJ_G0019968
 protein coding gene Chr12:97531300-97601762 (+)
AKR/J MGP_AKRJ_G0019944
 protein coding gene Chr12:100160646-100233626 (+)
BALB/cJ MGP_BALBcJ_G0019954
 protein coding gene Chr12:97869649-97940891 (+)
C3H/HeJ MGP_C3HHeJ_G0019756
 protein coding gene Chr12:100701708-100774486 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020403
 protein coding gene Chr12:104455006-104527468 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018017
 protein coding gene Chr12:94498861-94566897 (+)
CAST/EiJ MGP_CASTEiJ_G0019302
 protein coding gene Chr12:95799799-95882225 (+)
CBA/J MGP_CBAJ_G0019728
 protein coding gene Chr12:108331619-108412579 (+)
DBA/2J MGP_DBA2J_G0019839
 protein coding gene Chr12:96962231-97033320 (+)
FVB/NJ MGP_FVBNJ_G0019828
 protein coding gene Chr12:95676858-95747313 (+)
LP/J MGP_LPJ_G0019915
 protein coding gene Chr12:101163056-101236711 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019870
 protein coding gene Chr12:111948800-112021448 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020432
 protein coding gene Chr12:99725463-99799482 (+)
PWK/PhJ MGP_PWKPhJ_G0019066
 protein coding gene Chr12:91589625-91660407 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018862
 protein coding gene Chr12:93902822-93977899 (+)
WSB/EiJ MGP_WSBEiJ_G0019356
 protein coding gene Chr12:100581998-100655192 (+)



Homology
more
  • Human Ortholog
    TDP1, tyrosyl-DNA phosphodiesterase 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TDP1, tyrosyl-DNA phosphodiesterase 1
  • Links
    NCBI Gene ID: 55775
    neXtProt AC: NX_Q9NUW8
    UniProt: Q9NUW8

  • Chr Location
    14q32.11; chr14:89954939-90044764 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Tdp1 mouse models; 1 with human TDP1 associations

Human Disease Mouse Models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotypes from 2 alleles in 4 genetic backgrounds
    22 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit defective single strand DNA repair in neurons, decreased cerebellum size and increased sensitivity to topotecan.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    4
  • cDNA Data
    10
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000021177 Ensembl Gene Model | MGI Sequence Detail 70703 C57BL/6J ±  kb
    transcript ENSMUST00000153627 Ensembl | MGI Sequence Detail 2036 Not Applicable  
    polypeptide ENSMUSP00000118656 Ensembl | MGI Sequence Detail 609 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 12
      cDNA 10
      Primer pair 1
      Other 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1918105, MGI:2144890, MGI:2145029, MGI:3041233, MGI:5623441
    References
    more
    • Summaries
      All 47
      Developmental Gene Expression 2
      Diseases 1
      Gene Ontology 7
      Phenotypes 22
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:262613 Fam HK, et al., Reactive oxygen species stress increases accumulation of tyrosyl-DNA phsosphodiesterase 1 within mitochondria. Sci Rep. 2018 Mar 9;8(1):4304
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory