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Snapc4 Gene Detail
Summary
  • Symbol
    Snapc4
  • Name
    small nuclear RNA activating complex, polypeptide 4
  • Synonyms
    5730436L13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443935
    NCBI Gene: 227644
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:26252777-26270665 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 18.87 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    101 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443935
 protein coding gene Chr2:26252777-26270666 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025485
 protein coding gene Chr2:24311104-24329990 (-)
A/J MGP_AJ_G0025462
 protein coding gene Chr2:23380093-23397992 (-)
AKR/J MGP_AKRJ_G0025432
 protein coding gene Chr2:24142125-24159975 (-)
BALB/cJ MGP_BALBcJ_G0025458
 protein coding gene Chr2:23488699-23506542 (-)
C3H/HeJ MGP_C3HHeJ_G0025219
 protein coding gene Chr2:24099704-24118643 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025902
 protein coding gene Chr2:25094771-25112608 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023313
 protein coding gene Chr2:22259152-22276586 (-)
CAST/EiJ MGP_CASTEiJ_G0024682
 protein coding gene Chr2:23973793-23991645 (-)
CBA/J MGP_CBAJ_G0025197
 protein coding gene Chr2:25944159-25961972 (-)
DBA/2J MGP_DBA2J_G0025330
 protein coding gene Chr2:23201615-23219539 (-)
FVB/NJ MGP_FVBNJ_G0025292
 protein coding gene Chr2:22953284-22971283 (-)
LP/J MGP_LPJ_G0025416
 protein coding gene Chr2:24257578-24275417 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025323
 protein coding gene Chr2:26093890-26112914 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025961
 protein coding gene Chr2:24098461-24117238 (-)
PWK/PhJ MGP_PWKPhJ_G0024430
 protein coding gene Chr2:23004549-23022408 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024230
 protein coding gene Chr2:24231519-24251774 (-)
WSB/EiJ MGP_WSBEiJ_G0024751
 protein coding gene Chr2:24206562-24224437 (-)



Homology
more
  • Human Ortholog
    SNAPC4, small nuclear RNA activating complex polypeptide 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNAPC4, small nuclear RNA activating complex polypeptide 4
  • Synonyms
    NEDRSO, PTFalpha, SNAP190
  • Links
    NCBI Gene ID: 6621
    neXtProt AC: NX_Q5SXM2
    UniProt: Q5SXM2

  • Chr Location
    9q34.3; chr9:136375567-136400176 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    4 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    767
  • Tissues
    40
  • cDNA Data
    53
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000036281 Ensembl Gene Model | MGI Sequence Detail 17889 C57BL/6J ±  kb
    transcript ENSMUST00000114115 Ensembl | MGI Sequence Detail 4368 Not Applicable  
    polypeptide ENSMUSP00000109750 Ensembl | MGI Sequence Detail 1333 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 54
      cDNA 53
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 4
      Gene Ontology 4
      Phenotypes 4
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:274872 Ingham NJ, et al., Mouse screen reveals multiple new genes underlying mouse and human hearing loss. PLoS Biol. 2019 Apr;17(4):e3000194
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory