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Zic1 Gene Detail
Summary
  • Symbol
    Zic1
  • Name
    zinc finger protein of the cerebellum 1
  • Synonyms
    odd-paired homolog
  • Feature Type
    protein coding gene
  • IDs
    MGI:106683
    NCBI Gene: 22771
  • Alliance
    gene page
  • Transcription Start Sites
    14 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:91240111-91247863 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 48.26 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106683
 protein coding gene Chr9:91240111-91250136 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035123
 protein coding gene Chr9:92371694-92380776 (-)
A/J MGP_AJ_G0035104
 protein coding gene Chr9:89162935-89170623 (-)
AKR/J MGP_AKRJ_G0035036
 protein coding gene Chr9:91231268-91238947 (-)
BALB/cJ MGP_BALBcJ_G0035097
 protein coding gene Chr9:88788668-88796133 (-)
C3H/HeJ MGP_C3HHeJ_G0034807
 protein coding gene Chr9:91708289-91715916 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035617
 protein coding gene Chr9:94938356-94946575 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032520
 protein coding gene Chr9:87234428-87242181 (-)
CAST/EiJ MGP_CASTEiJ_G0034119
 protein coding gene Chr9:91462418-91471906 (-)
CBA/J MGP_CBAJ_G0034775
 protein coding gene Chr9:98204442-98212151 (-)
DBA/2J MGP_DBA2J_G0034937
 protein coding gene Chr9:88686408-88694175 (-)
FVB/NJ MGP_FVBNJ_G0034885
 protein coding gene Chr9:87667864-87675509 (-)
LP/J MGP_LPJ_G0035016
 protein coding gene Chr9:92587132-92595888 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034924
 protein coding gene Chr9:100002939-100010441 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035637
 protein coding gene Chr9:91488875-91496511 (-)
PWK/PhJ MGP_PWKPhJ_G0033826
 protein coding gene Chr9:88848873-88857006 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033661
 protein coding gene Chr9:91522711-91530430 (-)
WSB/EiJ MGP_WSBEiJ_G0034239
 protein coding gene Chr9:91382821-91391069 (-)



Homology
more
  • Human Ortholog
    ZIC1, Zic family member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZIC1, Zic family member 1
  • Synonyms
    BAIDCS, CRS6, ZIC, ZNF201
  • Links
    NCBI Gene ID: 7545
    neXtProt AC: NX_Q15915
    UniProt: Q15915

  • Chr Location
    3q24; chr3:147393422-147510293 (+)  GRCh38
Human Diseases
more
  • Diseases
    2 with Zic1 mouse models; 2 with human ZIC1 associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    20 phenotypes from 2 alleles in 4 genetic backgrounds
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutants show cerebellar hypoplasia with a missing lobule of the anterior lobe. Newborn pups suckle poorly. 50% die within one day of birth and almost all die within 3 weeks; longer survivors show marked ataxia and exhibit tonic convulsions.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    42
  • GO References
    18
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1136
  • Tissues
    171
  • cDNA Data
    25
  • Literature Summary
    116
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000032368 Ensembl Gene Model | MGI Sequence Detail 7753 C57BL/6J ±  kb
    transcript ENSMUST00000034927 Ensembl | MGI Sequence Detail 5606 Not Applicable  
    polypeptide ENSMUSP00000034927 Ensembl | MGI Sequence Detail 447 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 45
      Genomic 2
      cDNA 26
      Primer pair 11
      Other 6

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-35142
    References
    more
    • Summaries
      All 162
      Developmental Gene Expression 116
      Diseases 2
      Gene Ontology 18
      Phenotypes 17
    • Earliest
      J:31270 Aruga J, et al., A novel zinc finger protein, zic, is involved in neurogenesis, especially in the cell lineage of cerebellar granule cells. J Neurochem. 1994 Nov;63(5):1880-90
    • Latest
      J:342640 Sampath Kumar A, et al., Spatiotemporal transcriptomic maps of whole mouse embryos at the onset of organogenesis. Nat Genet. 2023 Jul;55(7):1176-1185
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory