rs6350754 SNP Detail

Summary

• ID
  rs6350754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135583768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGTTCG TCAGGAACGT
  GGCGGACGAC ACCAGGTGAG CGCACCGGAG CAGCTACTGC GCGGGGGAGG GAGGCCGCGG
  GCGCCCGGCG AGCGGCGGCC GTGGCGCGGG GGAGGGGCGG GGCGAAGATG GCGGGGCCCG
  CGCCGGCTCT AGGCCGCGCC GCCGGCCTGC AGGAGCAAGG GCGGACACCG GGCCGAGCGC
  Y
  GGCGAGCGAG CAGGCGTGAG GGCCGCGTGG CGGGCATTCG GGGGCCCCGT CCTCCCCCGC
  GTGCTCGGCG GCTGGGCCGA GCCGGCGGGC CGGACGTGTG TGTCCCTCAT GGATCCGACG
  TCCACGTTCC ATGAGGTGCA CGCCCCCCTC GGCCTGAAAG GGATTTTTGT TGTTGAAAAC
  GGGAAAAGGG TTGCCAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8756813	WI_WGS_4_133443803	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6350754					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135583768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm57106	predicted gene, 57106			534 bp upstream
Gm69173	predicted gene, 69173			84 bp upstream
Rr367748	regulatory region 367748			697 bp downstream
Rr398596	regulatory region 398596			331 bp downstream
Rr602160	regulatory region 602160			1281 bp distal
Rr602161	regulatory region 602161			700 bp distal
Rr602162	regulatory region 602162			545 bp distal
Rr602163	regulatory region 602163			within coordinates
Srsf10	serine and arginine-rich splicing factor 10			Intron
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			713 bp downstream
Tssr39639	transcription start site region 39639			333 bp downstream
Tssr39640	transcription start site region 39640			297 bp downstream
Tssr39641	transcription start site region 39641			206 bp downstream
Tssr39642	transcription start site region 39642			179 bp upstream
Tssr39643	transcription start site region 39643			1429 bp upstream
Tssr43999	transcription start site region 43999			560 bp upstream