rs6350381 SNP Detail

Summary

• ID
  rs6350381
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135583757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTAACAC GTCTCTGTTC
  GTCAGGAACG TGGCGGACGA CACCAGGTGA GCGCACCGGA GCAGCTACTG CGCGGGGGAG
  GGAGGCCGCG GGCGCCCGGC GAGCGGCGGC CGTGGCGCGG GGGAGGGGCG GGGCGAAGAT
  GGCGGGGCCC GCGCCGGCTC TAGGCCGCGC CGCCGGCCTG CAGGAGCAAG GGCGGACACC
  S
  GGCCGAGCGC TGGCGAGCGA GCAGGCGTGA GGGCCGCGTG GCGGGCATTC GGGGGCCCCG
  TCCTCCCCCG CGTGCTCGGC GGCTGGGCCG AGCCGGCGGG CCGGACGTGT GTGTCCCTCA
  TGGATCCGAC GTCCACGTTC CATGAGGTGC ACGCCCCCCT CGGCCTGAAA GGGATTTTTG
  TTGTTGAAAA CGGGAAAAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8756439	WI_WGS_4_133443792	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6350381					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135583757 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15082	CpG island 15082			within coordinates
Gm57106	predicted gene, 57106			523 bp upstream
Gm69173	predicted gene, 69173			73 bp upstream
Rr367748	regulatory region 367748			686 bp downstream
Rr398596	regulatory region 398596			320 bp downstream
Rr602160	regulatory region 602160			1270 bp distal
Rr602161	regulatory region 602161			689 bp distal
Rr602162	regulatory region 602162			534 bp distal
Rr602163	regulatory region 602163			within coordinates
Srsf10	serine and arginine-rich splicing factor 10			Intron
				Noncoding-Transcript-Variant
Tssr39638	transcription start site region 39638			702 bp downstream
Tssr39639	transcription start site region 39639			322 bp downstream
Tssr39640	transcription start site region 39640			286 bp downstream
Tssr39641	transcription start site region 39641			195 bp downstream
Tssr39642	transcription start site region 39642			190 bp upstream
Tssr39643	transcription start site region 39643			1440 bp upstream
Tssr43999	transcription start site region 43999			549 bp upstream