rs6300575 SNP Detail

Summary

• ID
  rs6300575
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84407703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGTTGGGATT
  ACAAGTTTGA GCCATAATGC TGGCTCTTTC GTTTTAAAAA CAACTTTATT GAAACACAAT
  GTCCATAGTG TACAAGTGAG CCATTCAAAG CGTACTCTCC TCCAGTTTCT AAAACAGCca
  gggtcatcta gcaatcacag tagaagtcag accattttca ccattcctct aaagcagtgt
  cctcaactgt tctaatgcan cgacccttta atacagtgtt tcatgtggtg gtgagcccca
  R
  ccatagtcat tttcattgtt aatactgtaa ttttgctact gttatgaatt gtaaggtaaa
  tatctgatat gcaggatgat cttagGTGAA ACAGATTGAG AATCTCTGCT CTGAAGCACC
  ANTGTAGCAT TTAATTGTCA CTTATATCCC TTAACCCTCC CACATCTTCC TCTCAACCTG
  TCAGCCCTAG GCANCTNCCA GCCTACTTTC TGTTTTCAGA GATTTCGGGG CAAATTGCTT
  AACCCATCTC                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8706496	WI_WGS_12_79056424	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6300575					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84407703 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			827 bp upstream
Cpgi4867	CpG island 4867			677 bp proximal
Fam161b	family with sequence similarity 161, member B			Intron
				Noncoding-Transcript-Variant
Rr403407	regulatory region 403407			784 bp upstream
Rr469627	regulatory region 469627			1683 bp distal
Rr469628	regulatory region 469628			380 bp proximal
Rr469629	regulatory region 469629			464 bp proximal
Rr469630	regulatory region 469630			882 bp proximal
Tssr114338	transcription start site region 114338			707 bp upstream
Tssr114339	transcription start site region 114339			1072 bp upstream
Tssr114340	transcription start site region 114340			1100 bp upstream
Tssr116998	transcription start site region 116998			853 bp downstream
Tssr116999	transcription start site region 116999			873 bp downstream