rs6186531 SNP Detail

Summary

• ID
  rs6186531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75456709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGGTCAC CTCCGGCCCA
  GGTAGATCTT GGACAATTCC AAATTGAGCC TCCCACAGAT GGTGCTCAGG CTGCCTCTTT
  TTGCCAGCGG CACCCTCCCT CTCCTCGTCT AGCCCCATCT AGTCCCTCTT TTAAGTCCAT
  CCCAGCCGCC TCTAGCCAGG CACTTGTTTC CCTTTGTCTC TGCTCCCCGT TCCAGAGATG
  Y
  TTCTAGAGCT GCCTGATGTG GGCAACCATT CCTTTGTCCA CTGTGCCCTT GCTGAATTCC
  CCCACTCGCA CTGTTATTGT AGTGGAGACC CACAACTGAC TCTTGACCCC AATTTCCTCC
  CTGTCAGGTT GTCCTGGGAG GGTGACCCCC TTCCATTCCC GGCGCTATGC CGGGTACTAT
  GGAAACTCTG CGGTTTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8592121	WI_WGS_1_76323123	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6186531					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75456709 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chpf	chondroitin polymerizing factor			758 bp upstream
Rr413451	regulatory region 413451			1348 bp distal
Rr413452	regulatory region 413452			475 bp distal
Rr413453	regulatory region 413453			353 bp distal
Tmem198	transmembrane protein 198			Intron
				mRNA-UTR
Tssr7538	transcription start site region 7538			548 bp downstream
Tssr7539	transcription start site region 7539			472 bp downstream
Tssr12402	transcription start site region 12402			941 bp upstream
Tssr12403	transcription start site region 12403			923 bp upstream
Tssr12404	transcription start site region 12404			906 bp upstream
Tssr12405	transcription start site region 12405			897 bp upstream
Tssr12406	transcription start site region 12406			707 bp upstream
Tssr12407	transcription start site region 12407			661 bp upstream