rs6153161 SNP Detail

Summary

• ID
  rs6153161
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59628762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATGGAA AGTGGTATAT GGTTACATGG TACTGATATA
  GTAGAAACAT GAGTTTTAGA GGCCTGTGTT AGAGAAAAAC CTCAAGATTT AGGAGAACAC
  K
  TTCATTACAA AGCTATTGCT TCACATAAAA CTCCGAGCTA GATAAACAGC TTAAAAATAA
  TATAGTCTGG CCTGGCTAAG TATGTAGTTA GTTGTAAGG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
ss8558654	WI_WGS_7_49353657	WI	MOUSE	f	SNP		G	T
ss144684768	ENSMUSSNP4735269	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	CZECHII/EiJ	DBA/2J
rs6153161					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59628762 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm38393	predicted gene, 38393			Intron
				Noncoding-Transcript-Variant
Snhg14	small nucleolar RNA host gene 14			722 bp upstream
Snord64	small nucleolar RNA, C/D box 64			158 bp upstream
Snord107	small nucleolar RNA, C/D box 107			1862 bp downstream
Tssr72695	transcription start site region 72695			1400 bp upstream
Tssr72696	transcription start site region 72696			1276 bp upstream
Tssr72697	transcription start site region 72697			140 bp upstream
Tssr72698	transcription start site region 72698			1920 bp downstream