Snhg14 MGI Mouse Gene Detail - MGI:1289201 - small nucleolar RNA host gene 14

Snhg14 Gene Detail

Symbol

Snhg14
Name

small nucleolar RNA host gene 14
Synonyms

C230091D08Rik, D7Ertd715e, Gm42386, Gm42387, Gm42388, Gm42389, Gm42390, Gm42391, Gm45921, Lncat

Feature Type

lncRNA gene
IDs

MGI:1289201
NCBI Gene: 52480
Alliance

gene page
Transcription Start Sites

9 TSS

Sequence Map

Chr7:58957672-59628040 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 34.04 cM
Mapping Data

5 experiments

SNPs within 2kb

5388 from dbSNP Build 142
Strain Annotations

2

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1289201	lncRNA gene	Chr7:58922485-60099925 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0013796	unclassified non-coding RNA gene	Chr7:61699646-62122117 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

SNHG14, small nucleolar RNA host gene 14

Vertebrate Orthologs

1

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

SNHG14, small nucleolar RNA host gene 14
Synonyms

115HG, IC-SNURF-SNRPN, LNCAT, NCRNA00214, UBE3A-AS, UBE3A-AS1, UBE3A-ATS, UBE3AATS, U-UBE3A-ATS
Links

HGNC:37462

NCBI Gene ID: 104472715
Chr Location

15q11.2; chr15:24823608-25420336 (+) GRCh38

MGI Vertebrate Homology

Snhg14 stringent orthology
1 human;1 mouse
HCOP

vertebrate homology predictions: SNHG14
Gene Tree

Snhg14

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References

5 with disease annotations

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Phenotype Summary

15 phenotypes from 3 alleles in 3 genetic backgrounds
6 phenotypes from multigenic genotypes
53 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

9
Endonuclease-mediated

2
Radiation induced

2
Targeted

4
Transgenic

1
Genomic Mutations

6 involving Snhg14
Find Mice (IMSR)

3 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a targeted allele ameliorates behavioral defects in the Angelman Syndrome mouse model.

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

36

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

53
RefSeq

1

Ensembl

ENSMUSG00000100826 (Evidence)
NCBI Gene

52480

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000100826	Ensembl Gene Model \| MGI Sequence Detail	670369	C57BL/6J	± kb
	transcript	ENSMUST00000189581	Ensembl \| MGI Sequence Detail	6861	Not Applicable

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All nucleic 37

cDNA 36

Primer pair 1

Microarray probesets 3

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MGI:2142125, MGI:3041193, MGI:5625271, MGI:5625272, MGI:5625273, MGI:5625274, MGI:5625275, MGI:5625276, MGI:5825558

Summaries

All 91

Diseases 5

Phenotypes 53
Earliest

J:29903 Russell LB, et al., Complementation analyses for 45 mutations encompassing the pink-eyed dilution (p) locus of the mouse. Genetics. 1995 Dec;141(4):1547-62
Latest

J:369799 Wang SE, et al., Mechanism of EHMT2-mediated genomic imprinting associated with Prader-Willi syndrome. Nat Commun. 2025 Jul 3;16(1):6125

TSS for Snhg14:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72696	Chr7:59627473-59627486 (-)	560 bp
Tssr72695	Chr7:59627358-59627362 (-)	680 bp
Tssr72694	Chr7:59626302-59626313 (-)	1,732 bp
Tssr72693	Chr7:59611747-59611762 (-)	16,285 bp
Tssr72692	Chr7:59580576-59580588 (-)	47,458 bp
Tssr72691	Chr7:59580548-59580559 (-)	47,486 bp
Tssr72690	Chr7:59572354-59572372 (-)	55,677 bp
Tssr2279	Chr7:58973893-58973901 (-)	654,143 bp
Tssr72687	Chr7:58965131-58965136 (-)	662,906 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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