rs51481781 SNP Detail

Summary

• ID
  rs51481781
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135582165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGACGC ATTCCCAGCG
  GGCAGTACTT TCCTGAAGGC CTTCGGTACA GCCTCCTTCA CACCACTCCT TTGGCAGAGC
  TGCTGTTTGG TAAATTGCAC AACGTGCCCA AAAGCCTGGT GGTCAAGGGG TGTTGGACTT
  CTTGCTTTTC TTCTTGGTCA TACTCTCATT CTCTCCGCAG TCCTCATGTT TACCAGAGAC
  C
  GTGTGATGTA TGTGAGGGAA GTGATGTGTG CATCTTCTCA CTCATAAGTT TGAACTCCGT
  AGATATTAAC GCATATAAGC CATATTTAAA AACAGGGCGC TGGGCAGTGG TGGCGCACGC
  CTTTGATCCC AGCACTTGGG AGGCACAGGC AGGTGGATTT CTGAGTTCGA GGCCAGCCTG
  GTCTACAAAG TGAGTTCCAG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147552088	ENSMUSSNP2770771	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs51481781					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135582165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	580 bp proximal
Gm13000	predicted gene 13000	681 bp downstream
Gm57106	predicted gene, 57106	280 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	723 bp upstream
Rr398596	regulatory region 398596	971 bp upstream
Rr602159	regulatory region 602159	611 bp distal
Rr602160	regulatory region 602160	301 bp proximal
Rr602161	regulatory region 602161	403 bp proximal
Rr602162	regulatory region 602162	904 bp proximal
Rr602163	regulatory region 602163	1059 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	893 bp upstream
Tssr39638	transcription start site region 39638	853 bp upstream
Tssr39639	transcription start site region 39639	1233 bp upstream
Tssr39640	transcription start site region 39640	1274 bp upstream
Tssr39641	transcription start site region 39641	1388 bp upstream
Tssr39642	transcription start site region 39642	1782 bp upstream
Tssr43999	transcription start site region 43999	1015 bp downstream