rs51184914 SNP Detail

Summary

• ID
  rs51184914
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:49675294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA AGCCAGTTTC CCAATATTGC
  Y
  GATAGCGTCA AGGATCTGTT TACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148123700	ENSMUSSNP3069437	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325174432	CHEV_16_49855044	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51184914					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49675294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm4633	predicted gene 4633			Intron
				Noncoding-Transcript-Variant
Gm56621	predicted gene, 56621			within coordinates
Gm60685	predicted gene, 60685			1306 bp upstream
Rr370104	regulatory region 370104			1113 bp upstream
Rr516740	regulatory region 516740			1482 bp distal
Rr516741	regulatory region 516741			423 bp distal
Rr516742	regulatory region 516742			within coordinates
Rr516743	regulatory region 516743			446 bp proximal
Rr516744	regulatory region 516744			560 bp proximal
Rr516745	regulatory region 516745			1230 bp proximal
Tssr4899	transcription start site region 4899			175 bp upstream
Tssr4900	transcription start site region 4900			329 bp upstream
Tssr4901	transcription start site region 4901			439 bp upstream
Tssr4902	transcription start site region 4902			554 bp upstream
Tssr4903	transcription start site region 4903			836 bp upstream
Tssr138723	transcription start site region 138723			1754 bp downstream
Tssr138724	transcription start site region 138724			572 bp downstream
Tssr138725	transcription start site region 138725			387 bp downstream
Tssr138726	transcription start site region 138726			158 bp upstream
Tssr138727	transcription start site region 138727			188 bp upstream
Tssr138728	transcription start site region 138728			418 bp upstream
Tssr138729	transcription start site region 138729			693 bp upstream
Tssr138730	transcription start site region 138730			814 bp upstream
Tssr138731	transcription start site region 138731			1141 bp upstream
Tssr138732	transcription start site region 138732			1287 bp upstream
Tssr138733	transcription start site region 138733			1375 bp upstream
Tssr138734	transcription start site region 138734			1627 bp upstream
Tssr138735	transcription start site region 138735			1665 bp upstream
Tssr141348	transcription start site region 141348			366 bp downstream
Tssr141349	transcription start site region 141349			586 bp downstream
Tssr141350	transcription start site region 141350			901 bp downstream
Tssr141351	transcription start site region 141351			1185 bp downstream
Tssr141352	transcription start site region 141352			1416 bp downstream