Gm56621 Gene Detail

Summary

• Symbol
  Gm56621
• Name
  predicted gene, 56621

• Feature Type
  lncRNA gene
• IDs
  MGI:7337156
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr16:49674861-49675662 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337156	lncRNA gene	Chr16:49674861-49675662 (+)
129S1/SvImJ	ENSMUSG00200021693	lncRNA gene	Chr16:46560401-46561203 (+)
A/J	ENSMUSG00195003554	lncRNA gene	Chr16:46162343-46163144 (+)
AKR/J	ENSMUSG00220023038	lncRNA gene	Chr16:46515633-46516434 (+)
BALB/cJ	ENSMUSG00180029176	lncRNA gene	Chr16:46366963-46367764 (+)
C3H/HeJ	ENSMUSG00175026536	lncRNA gene	Chr16:46640944-46641743 (+)
C57BL/6NJ	ENSMUSG00215008850	lncRNA gene	Chr16:46476471-46477272 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012922	lncRNA gene	Chr16:46775795-46776596 (+)
CBA/J	ENSMUSG00210016828	lncRNA gene	Chr16:46677387-46678186 (+)
DBA/2J	ENSMUSG00185011255	lncRNA gene	Chr16:46547146-46547947 (+)
FVB/NJ	ENSMUSG00205012833	lncRNA gene	Chr16:46451004-46451805 (+)
JF1/MsJ	ENSUMUG00000032899	lncRNA gene	Chr16:46777198-46777999 (+)
LP/J	ENSMUSG00230028968	lncRNA gene	Chr16:49112801-49113603 (+)
NOD/ShiLtJ	ENSMUSG00190019664	lncRNA gene	Chr16:46579606-46580407 (+)
NZO/HlLtJ	ENSMUSG00225026087	lncRNA gene	Chr16:52204589-52205390 (+)
PWK/PhJ	ENSLUMG00010028582	lncRNA gene	Chr16:46601923-46602724 (+)
SPRET/EiJ	ENSMSPG00010007681	lncRNA gene	Chr16:46854479-46855282 (+)
WSB/EiJ	ENSIUOG00005013351	lncRNA gene	Chr16:46754256-46755058 (+)

Homology

• Gene Tree
  Gm56621
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120744 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120744	Ensembl Gene Model | MGI Sequence Detail	802	C57BL/6J
transcript	ENSMUST00000245507	Ensembl | MGI Sequence Detail	802	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56621:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138723	Chr16:49673517-49673540 (+)	-1,332 bp
Tssr138724	Chr16:49674710-49674722 (+)	-145 bp
Tssr138725	Chr16:49674900-49674907 (+)	43 bp
Tssr138726	Chr16:49675452-49675463 (+)	597 bp
Tssr4899	Chr16:49675469-49675479 (+)	613 bp
Tssr138727	Chr16:49675482-49675493 (+)	627 bp
Tssr4900	Chr16:49675623-49675629 (+)	765 bp