Gm4633 Gene Detail

Summary

• Symbol
  Gm4633
• Name
  predicted gene 4633

• Feature Type
  lncRNA gene
• IDs
  MGI:3782815
  NCBI Gene: 100043767
• Alliance
  genome feature page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr16:49632094-49675409 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1271 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3782815	lncRNA gene	Chr16:49627227-49685491 (-)
129S1/SvImJ	ENSMUSG00200021680	lncRNA gene	Chr16:46554131-46561505 (-)
A/J	ENSMUSG00195003543	lncRNA gene	Chr16:46156073-46163446 (-)
AKR/J	ENSMUSG00220022989	lncRNA gene	Chr16:46509370-46516736 (-)
BALB/cJ	ENSMUSG00180029090	lncRNA gene	Chr16:46360698-46368066 (-)
C3H/HeJ	ENSMUSG00175026488	lncRNA gene	Chr16:46634550-46642045 (-)
C57BL/6NJ	ENSMUSG00215008732	lncRNA gene	Chr16:46470209-46477574 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012909	lncRNA gene	Chr16:46769470-46776898 (-)
CBA/J	ENSMUSG00210016818	lncRNA gene	Chr16:46671011-46678488 (-)
DBA/2J	ENSMUSG00185011237	lncRNA gene	Chr16:46540878-46548249 (-)
FVB/NJ	ENSMUSG00205012748	lncRNA gene	Chr16:46444775-46452107 (-)
JF1/MsJ	ENSUMUG00000032651	lncRNA gene	Chr16:46770839-46778301 (-)
LP/J	ENSMUSG00230029177	lncRNA gene	Chr16:49106584-49113905 (-)
NOD/ShiLtJ	ENSMUSG00190019593	lncRNA gene	Chr16:46573375-46580709 (-)
NZO/HlLtJ	ENSMUSG00225026159	lncRNA gene	Chr16:52198324-52205692 (-)
PWK/PhJ	ENSLUMG00010028496	lncRNA gene	Chr16:46595626-46603026 (-)
SPRET/EiJ	ENSMSPG00010007646	lncRNA gene	Chr16:46848191-46855584 (-)
WSB/EiJ	ENSIUOG00005013330	lncRNA gene	Chr16:46748001-46755360 (-)

Homology

• Gene Tree
  Gm4633
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2

• Ensembl
  ENSMUSG00000120198 (Evidence)
• NCBI Gene
  100043767

Representative Sequences			Length	Strain/Species
genomic	100043767	NCBI Gene Model | MGI Sequence Detail	43316	C57BL/6J
transcript	AK044286	GenBank | ENA | DDBJ | MGI Sequence Detail	1973	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4633:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141352	Chr16:49676710-49676743 (-)	-1,318 bp
Tssr141351	Chr16:49676479-49676491 (-)	-1,076 bp
Tssr141350	Chr16:49676195-49676206 (-)	-792 bp
Tssr141349	Chr16:49675880-49675935 (-)	-499 bp
Tssr141348	Chr16:49675660-49675675 (-)	-259 bp
Tssr141347	Chr16:49669142-49669157 (-)	6,259 bp
Tssr141346	Chr16:49668431-49668448 (-)	6,969 bp
Tssr141345	Chr16:49668011-49668039 (-)	7,384 bp
Tssr141344	Chr16:49660391-49660409 (-)	15,009 bp
Tssr141343	Chr16:49660189-49660211 (-)	15,209 bp