rs50518097 SNP Detail

Summary

• ID
  rs50518097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:75454878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGATGCTC CCTGCAACAT GAATATGCTG TCAGCCCCGC
  CCCCCCAATA TGTCCTATAA ATGATGTGTA GAAGCATACG GCATAGTGGT GTAGAGAATG
  Y
  CTTTTGGAGA GGGGCAAACT AAGGCAGTGA CTCACCTTCC TAAGGTAGAA GGTAAGTTGT
  ACAACTGGAA TTCACTGTTA CTTAGAAGAA ATTACTTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350142725	MGP_WTSI_1_75474809	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50518097					SNP	C	C	C	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350142725	MGP_WTSI_1_75474809	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75454878 () rs orientation: forward

Symbol	Name	Function Class
Chpf	chondroitin polymerizing factor	Intron
Rr413448	regulatory region 413448	874 bp distal
Rr413449	regulatory region 413449	640 bp distal
Rr413450	regulatory region 413450	183 bp distal
Rr413451	regulatory region 413451	462 bp proximal
Rr413452	regulatory region 413452	1027 bp proximal
Rr413453	regulatory region 413453	1457 bp proximal
Tmem198	transmembrane protein 198	1298 bp upstream
Tssr7538	transcription start site region 7538	1272 bp upstream
Tssr7539	transcription start site region 7539	1295 bp upstream
Tssr12402	transcription start site region 12402	869 bp downstream
Tssr12403	transcription start site region 12403	891 bp downstream
Tssr12404	transcription start site region 12404	914 bp downstream
Tssr12405	transcription start site region 12405	927 bp downstream
Tssr12406	transcription start site region 12406	1050 bp downstream
Tssr12407	transcription start site region 12407	1155 bp downstream