rs50312824 SNP Detail

Summary

• ID
  rs50312824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146165668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGCTCC TTGTAGCGAT
  GCTGCAGGCC ATCAAGTGCC CTACAAGGTG ATCATGAAGC AGGTAAATGG CTCTGTTTCT
  GGAAGCCAGT GGAATAAAGA CCAGCAAGCT CCCTATTATA ACTACAAGGT ACATTTTCAC
  AATTTTTGAA CATTTATGCT GTTTACATAA TTTTATTATG TTGTGGTTAG GTGTGTGGCA
  Y
  TAACAGCTAC CAGTTTTACT GTTTTTTACT GTTTATTTGT GTAAGCCTGT CTTTGAAGCT
  GTGTAATCAG TAGATTTAGT TCCCCAGAGA GCAATTCAAG TTACATTACT AGTATAATGC
  TCTGCTTGGT CAGTTTCCTT TTGAAAGTTC TATAAAATGT GCATATCACA AGCAGGACTT
  GCTTAAGAGT TGGCAATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136044666	ENSMUSSNP613153	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50312824					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146165668 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	Intron
Rr587031	regulatory region 587031	586 bp distal
Spata1	spermatogenesis associated 1	Intron