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Spata1 Gene Detail
Summary
  • Symbol
    Spata1
  • Name
    spermatogenesis associated 1
  • Synonyms
    4921536I21Rik, SP-2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918201
    NCBI Gene: 70951
  • Alliance
    genome feature page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:146162951-146205508 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 71.30 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    972 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918201
 protein coding gene Chr3:146162951-146205548 (-)
129S1/SvImJ ENSMUSG00200003541
 protein coding gene Chr3:143087642-143120299 (-)
A/J ENSMUSG00195003260
 protein coding gene Chr3:143203117-143233424 (-)
AKR/J ENSMUSG00220000403
 protein coding gene Chr3:141615509-141648168 (-)
BALB/cJ ENSMUSG00180023026
 protein coding gene Chr3:143073521-143103839 (-)
C3H/HeJ ENSMUSG00175018379
 protein coding gene Chr3:142655523-142685835 (-)
C57BL/6NJ ENSMUSG00215009655
 protein coding gene Chr3:143355200-143388633 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025724
 protein coding gene Chr3:139649987-139689562 (-)
CAST/EiJ ENSTCUG00005000890
 protein coding gene Chr3:143752790-143782872 (-)
CBA/J ENSMUSG00210003614
 protein coding gene Chr3:143332905-143363215 (-)
DBA/2J ENSMUSG00185024988
 protein coding gene Chr3:143920630-143953299 (-)
FVB/NJ ENSMUSG00205017919
 protein coding gene Chr3:142195288-142228719 (-)
JF1/MsJ ENSUMUG00000030003
 protein coding gene Chr3:142723916-142753507 (-)
LP/J ENSMUSG00230018056
 protein coding gene Chr3:145841038-145873699 (-)
NOD/ShiLtJ ENSMUSG00190004026
 protein coding gene Chr3:144293228-144323679 (-)
NZO/HlLtJ ENSMUSG00225002499
 protein coding gene Chr3:148351546-148384980 (-)
PWK/PhJ ENSLUMG00010019543
 protein coding gene Chr3:142632673-142662011 (-)
SPRET/EiJ ENSMSPG00010007512
 protein coding gene Chr3:143935057-143970957 (-)
WSB/EiJ ENSIUOG00005014978
 protein coding gene Chr3:143383715-143422879 (-)



Homology
more
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SPATA1, spermatogenesis associated 1
  • Synonyms
    SP-2, SPAP1
  • Links
    NCBI Gene ID: 100505741
    UniProt: Q5VX52

  • Chr Location
    chr1:84506300-84567379 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    19
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028188 Ensembl Gene Model | MGI Sequence Detail 42558 C57BL/6J ±  kb
transcript ENSMUST00000197980 Ensembl | MGI Sequence Detail 1807 Not Applicable  
polypeptide ENSMUSP00000142800 Ensembl | MGI Sequence Detail 444 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000015478 spermatogenesis-associated protein 1
    (term hierarchy)
  • InterPro Domains
    IPR039062 Spermatogenesis-associated protein 1
    IPR031478 Spermatogenesis-associated protein 1, C-terminal domain
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 3
Other
Accession IDs
less
MGI:2139945
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:286593 Zhang L, et al., Mouse spermatogenesis-associated protein 1 (SPATA1), an IFT20 binding partner, is an acrosomal protein. Dev Dyn. 2020 Apr;249(4):543-555
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory