rs49669576 SNP Detail

Summary

• ID
  rs49669576
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38940928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTT TCGCCTCACT CTCTTCTGCG
  C
  TGCGCGACTT ACCGGCCACC TAGAG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134846145	ENSMUSSNP4515656	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320724099	CHEV_3_38785701	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49669576					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38940928 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	within coordinates
Fat4	FAT atypical cadherin 4	Intron
Gm56780	predicted gene, 56780	331 bp downstream
Gm65329	predicted gene, 65329	1233 bp upstream
Rr575717	regulatory region 575717	1244 bp distal
Rr575719	regulatory region 575719	1080 bp distal
Rr575720	regulatory region 575720	656 bp distal
Rr575721	regulatory region 575721	within coordinates
Rr575722	regulatory region 575722	983 bp proximal
Rr575723	regulatory region 575723	1104 bp proximal
Rr575724	regulatory region 575724	1253 bp proximal
Rr575725	regulatory region 575725	1470 bp proximal
Rr575726	regulatory region 575726	1513 bp proximal
Tssr28930	transcription start site region 28930	1448 bp downstream
Tssr28931	transcription start site region 28931	1077 bp downstream
Tssr28932	transcription start site region 28932	1051 bp downstream
Tssr28933	transcription start site region 28933	1015 bp downstream
Tssr28934	transcription start site region 28934	925 bp downstream
Tssr28935	transcription start site region 28935	892 bp downstream
Tssr28936	transcription start site region 28936	874 bp downstream