Gm56780 Gene Detail

Summary

• Symbol
  Gm56780
• Name
  predicted gene, 56780

• Feature Type
  lncRNA gene
• IDs
  MGI:7337473
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr3:38939838-38940597 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337473	lncRNA gene	Chr3:38939838-38940597 (+)
129S1/SvImJ	ENSMUSG00200006556	lncRNA gene	Chr3:35668908-35669443 (+)
A/J	ENSMUSG00195001511	lncRNA gene	Chr3:35640431-35640966 (+)
AKR/J	ENSMUSG00220000872	lncRNA gene	Chr3:35744954-35745489 (+)
BALB/cJ	ENSMUSG00180002747	lncRNA gene	Chr3:35795811-35796346 (+)
C3H/HeJ	ENSMUSG00175003898	lncRNA gene	Chr3:35684359-35684894 (+)
C57BL/6NJ	ENSMUSG00215001575	lncRNA gene	Chr3:36076035-36076570 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001213	lncRNA gene	Chr3:35515287-35515822 (+)
CBA/J	ENSMUSG00210001862	lncRNA gene	Chr3:35738708-35739243 (+)
DBA/2J	ENSMUSG00185001848	lncRNA gene	Chr3:35955075-35955610 (+)
FVB/NJ	ENSMUSG00205000809	lncRNA gene	Chr3:35108160-35108696 (+)
JF1/MsJ	ENSUMUG00000000609	lncRNA gene	Chr3:35489886-35490421 (+)
LP/J	ENSMUSG00230024793	lncRNA gene	Chr3:37913924-37914459 (+)
NOD/ShiLtJ	ENSMUSG00190001761	lncRNA gene	Chr3:36014035-36014570 (+)
NZO/HlLtJ	ENSMUSG00225007568	lncRNA gene	Chr3:40534843-40535378 (+)
PWK/PhJ	ENSLUMG00010000728	lncRNA gene	Chr3:35518796-35519331 (+)
SPRET/EiJ	ENSMSPG00010000689	lncRNA gene	Chr3:35943918-35944453 (+)
WSB/EiJ	ENSIUOG00005014564	lncRNA gene	Chr3:35961147-35961682 (+)

Homology

• Gene Tree
  Gm56780
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120375 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120375	Ensembl Gene Model | MGI Sequence Detail	760	C57BL/6J
transcript	ENSMUST00000242855	Ensembl | MGI Sequence Detail	760	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56780:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28930	Chr3:38939461-38939480 (+)	-367 bp
Tssr28931	Chr3:38939832-38939851 (+)	4 bp
Tssr28932	Chr3:38939859-38939877 (+)	30 bp
Tssr28933	Chr3:38939891-38939913 (+)	64 bp
Tssr28934	Chr3:38939992-38940003 (+)	160 bp
Tssr28935	Chr3:38940025-38940036 (+)	193 bp
Tssr28936	Chr3:38940037-38940054 (+)	208 bp