rs49611879 SNP Detail

Summary

• ID
  rs49611879
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCTAAT CCTCCCTGCG
  CTTTTAAACA GAAAGAGAGA AATGTGAGCA TGTGTGTGTG GGTATGGGTG TGCCGGTGCC
  CGCAGAAGTC AGAAGAGGGT GCTGGATCCC CTAGAGATGG AGTTGCAGGC GGCTGTGAGC
  CACCTACATT GGAACTGAAC TCAGGTCCGT GCTCTGGAAG AGCAGCGCGT GCTCTTAACC
  A
  CTGAGCCACC TCTCTAGTCG CTTTCGAACA AAAAGATTTG CAGCAACTTA TTCCCCCACC
  CAGATGACCA AATTATAATT TAAATCAATT ATACCATCTT GCAATAAAGC AAAGATTCAA
  ACAAAATACT GAAGACGCAT TCCCAGCGGG CAGTACTTTC CTGAAGGCCT TCGGTACAGC
  CTCCTTCACA CCACTCCTTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147552082	ENSMUSSNP750150	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs49611879					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	909 bp proximal
Gm13000	predicted gene 13000	352 bp downstream
Gm57106	predicted gene, 57106	609 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1052 bp upstream
Rr398596	regulatory region 398596	1300 bp upstream
Rr602158	regulatory region 602158	1737 bp distal
Rr602159	regulatory region 602159	282 bp distal
Rr602160	regulatory region 602160	630 bp proximal
Rr602161	regulatory region 602161	732 bp proximal
Rr602162	regulatory region 602162	1233 bp proximal
Rr602163	regulatory region 602163	1388 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1222 bp upstream
Tssr39638	transcription start site region 39638	1182 bp upstream
Tssr39639	transcription start site region 39639	1562 bp upstream
Tssr39640	transcription start site region 39640	1603 bp upstream
Tssr39641	transcription start site region 39641	1717 bp upstream
Tssr43999	transcription start site region 43999	1344 bp downstream