rs47639941 SNP Detail

Summary

• ID
  rs47639941
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGGAGC TCATCTACGT
  GGTTGAATCT TCCTGGGTTG CTACTGAAAT TACAGTGCCT TTCTTAAGAA ATGTTCATTT
  ATTGGGTTAC ATCGATCTGC CAGCCAGTCG GGTATTTCTA ATCCTCCCTG CGCTTTTAAA
  CAGAAAGAGA GAAATGTGAG CATGTGTGTG TGGGTATGGG TGTGCCGGTG CCCGCAGAAG
  C
  CAGAAGAGGG TGCTGGATCC CCTAGAGATG GAGTTGCAGG CGGCTGTGAG CCACCTACAT
  TGGAACTGAA CTCAGGTCCG TGCTCTGGAA GAGCAGCGCG TGCTCTTAAC CGCTGAGCCA
  CCTCTCTAGT CGCTTTCGAA CAAAAAGATT TGCAGCAACT TATTCCCCCA CCCAGATGAC
  CAAATTATAA TTTAAATCAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147552073	ENSMUSSNP6622750	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs47639941					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581724 () rs orientation: forward

Symbol	Name	Function Class
Gm13000	predicted gene 13000	240 bp downstream
Gm57106	predicted gene, 57106	721 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1164 bp upstream
Rr398596	regulatory region 398596	1412 bp upstream
Rr602158	regulatory region 602158	1625 bp distal
Rr602159	regulatory region 602159	170 bp distal
Rr602160	regulatory region 602160	742 bp proximal
Rr602161	regulatory region 602161	844 bp proximal
Rr602162	regulatory region 602162	1345 bp proximal
Rr602163	regulatory region 602163	1500 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1334 bp upstream
Tssr39638	transcription start site region 39638	1294 bp upstream
Tssr39639	transcription start site region 39639	1674 bp upstream
Tssr39640	transcription start site region 39640	1715 bp upstream
Tssr39641	transcription start site region 39641	1829 bp upstream
Tssr43999	transcription start site region 43999	1456 bp downstream