rs47521457 SNP Detail

Summary

• ID
  rs47521457
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135581726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGAGCTC ATCTACGTGG
  TTGAATCTTC CTGGGTTGCT ACTGAAATTA CAGTGCCTTT CTTAAGAAAT GTTCATTTAT
  TGGGTTACAT CGATCTGCCA GCCAGTCGGG TATTTCTAAT CCTCCCTGCG CTTTTAAACA
  GAAAGAGAGA AATGTGAGCA TGTGTGTGTG GGTATGGGTG TGCCGGTGCC CGCAGAAGTC
  G
  GAAGAGGGTG CTGGATCCCC TAGAGATGGA GTTGCAGGCG GCTGTGAGCC ACCTACATTG
  GAACTGAACT CAGGTCCGTG CTCTGGAAGA GCAGCGCGTG CTCTTAACCG CTGAGCCACC
  TCTCTAGTCG CTTTCGAACA AAAAGATTTG CAGCAACTTA TTCCCCCACC CAGATGACCA
  AATTATAATT TAAATCAATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147552077	ENSMUSSNP5522526	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs47521457					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135581726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15082	CpG island 15082	1019 bp proximal
Gm13000	predicted gene 13000	242 bp downstream
Gm57106	predicted gene, 57106	719 bp downstream
Gm69173	predicted gene, 69173	within coordinates
Rr367748	regulatory region 367748	1162 bp upstream
Rr398596	regulatory region 398596	1410 bp upstream
Rr602158	regulatory region 602158	1627 bp distal
Rr602159	regulatory region 602159	172 bp distal
Rr602160	regulatory region 602160	740 bp proximal
Rr602161	regulatory region 602161	842 bp proximal
Rr602162	regulatory region 602162	1343 bp proximal
Rr602163	regulatory region 602163	1498 bp proximal
Srsf10	serine and arginine-rich splicing factor 10	1332 bp upstream
Tssr39638	transcription start site region 39638	1292 bp upstream
Tssr39639	transcription start site region 39639	1672 bp upstream
Tssr39640	transcription start site region 39640	1713 bp upstream
Tssr39641	transcription start site region 39641	1827 bp upstream
Tssr43999	transcription start site region 43999	1454 bp downstream