rs4136719 SNP Detail

Summary

• ID
  rs4136719
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  109
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23250072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG GCTCCTCCGC CCCACCCAGA
  M
  GGTGCGAGTC AGTTTAAACA CTGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5107484	WI_WGS_6_23210407	WI	MOUSE	f	SNP	A	C
ss321767796	CHEV_6_23200073	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs4136719					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23250072 () rs orientation: forward

Symbol	Name	Function Class
C130093G08Rik	RIKEN cDNA C130093G08 gene	1060 bp upstream
Cpgi17197	CpG island 17197	within coordinates
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	1525 bp distal
Rr627165	regulatory region 627165	402 bp distal
Rr627166	regulatory region 627166	within coordinates
Rr627167	regulatory region 627167	299 bp distal
Rr627168	regulatory region 627168	1213 bp proximal
Tssr55159	transcription start site region 55159	1525 bp downstream
Tssr55160	transcription start site region 55160	1445 bp downstream
Tssr55161	transcription start site region 55161	1295 bp downstream
Tssr55162	transcription start site region 55162	1236 bp downstream
Tssr55163	transcription start site region 55163	1085 bp upstream
Tssr59962	transcription start site region 59962	1683 bp upstream