Gm56925 Gene Detail

Summary

• Symbol
  Gm56925
• Name
  predicted gene, 56925

• Feature Type
  lncRNA gene
• IDs
  MGI:7337763
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:23248510-23253453 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337763	lncRNA gene	Chr6:23248510-23253453 (+)
129S1/SvImJ	ENSMUSG00200035796	lncRNA gene	Chr6:20300184-20301223 (+)
A/J	ENSMUSG00195009347	lncRNA gene	Chr6:20272656-20273696 (+)
AKR/J	ENSMUSG00220001083	lncRNA gene	Chr6:19840714-19841754 (+)
BALB/cJ	ENSMUSG00180025158	lncRNA gene	Chr6:20403724-20404764 (+)
C3H/HeJ	ENSMUSG00175020388	lncRNA gene	Chr6:20211500-20212542 (+)
C57BL/6NJ	ENSMUSG00215032123	lncRNA gene	Chr6:20310996-20312036 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022670	lncRNA gene	Chr6:19988037-19989079 (+)
CBA/J	ENSMUSG00210004946	lncRNA gene	Chr6:20250281-20251320 (+)
DBA/2J	ENSMUSG00185022585	lncRNA gene	Chr6:20354510-20355550 (+)
FVB/NJ	ENSMUSG00205035111	lncRNA gene	Chr6:20304179-20305220 (+)
JF1/MsJ	ENSUMUG00000042800	lncRNA gene	Chr6:20148818-20149859 (+)
LP/J	ENSMUSG00230031025	lncRNA gene	Chr6:21317068-21318108 (+)
NOD/ShiLtJ	ENSMUSG00190028120	lncRNA gene	Chr6:20104299-20105340 (+)
NZO/HlLtJ	ENSMUSG00225014803	lncRNA gene	Chr6:23290203-23291243 (+)
PWK/PhJ	ENSLUMG00010020609	lncRNA gene	Chr6:19858108-19859148 (+)
SPRET/EiJ	ENSMSPG00010023881	lncRNA gene	Chr6:20216861-20217912 (+)
WSB/EiJ	ENSIUOG00005036254	lncRNA gene	Chr6:20380066-20381105 (+)

Homology

• Gene Tree
  Gm56925
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120116 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120116	Ensembl Gene Model | MGI Sequence Detail	4944	C57BL/6J
transcript	ENSMUST00000331235	Ensembl | MGI Sequence Detail	1711	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56925:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55159	Chr6:23248537-23248547 (+)	32 bp
Tssr55160	Chr6:23248618-23248627 (+)	113 bp
Tssr55161	Chr6:23248765-23248777 (+)	261 bp
Tssr55162	Chr6:23248827-23248836 (+)	322 bp