C130093G08Rik Gene Detail

Summary

• Symbol
  C130093G08Rik
• Name
  RIKEN cDNA C130093G08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443208
  NCBI Gene: 320032
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:23251132-23253357 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443208	lncRNA gene	Chr6:23251132-23253357 (+)
129S1/SvImJ	ENSMUSG00200035788	unclassified gene	Chr6:20302547-20304772 (+)
A/J	ENSMUSG00195009369	unclassified gene	Chr6:20275020-20277245 (+)
AKR/J	ENSMUSG00220001085	unclassified gene	Chr6:19843079-19845304 (+)
BALB/cJ	ENSMUSG00180025208	unclassified gene	Chr6:20406089-20408314 (+)
C3H/HeJ	ENSMUSG00175020407	unclassified gene	Chr6:20213854-20216058 (+)
C57BL/6NJ	ENSMUSG00215032204	unclassified gene	Chr6:20313360-20315585 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001620	unclassified gene	Chr6:18466576-18468875 (+)
CAST/EiJ	ENSTCUG00005022648	unclassified gene	Chr6:19990389-19992599 (+)
CBA/J	ENSMUSG00210004956	unclassified gene	Chr6:20252632-20254836 (+)
DBA/2J	ENSMUSG00185022599	unclassified gene	Chr6:20356872-20359097 (+)
FVB/NJ	ENSMUSG00205035193	unclassified gene	Chr6:20306532-20308736 (+)
JF1/MsJ	ENSUMUG00000042762	unclassified gene	Chr6:20151161-20153364 (+)
LP/J	ENSMUSG00230030947	unclassified gene	Chr6:21319430-21321655 (+)
NOD/ShiLtJ	ENSMUSG00190028153	unclassified gene	Chr6:20106652-20108856 (+)
NZO/HlLtJ	ENSMUSG00225014782	unclassified gene	Chr6:23292544-23294771 (+)
PWK/PhJ	ENSLUMG00010020601	unclassified gene	Chr6:19860456-19862652 (+)
SPRET/EiJ	ENSMSPG00010023908	unclassified gene	Chr6:20219209-20221420 (+)
WSB/EiJ	ENSIUOG00005036287	unclassified gene	Chr6:20382419-20384629 (+)

Homology

• Gene Tree
  C130093G08Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000106775 (Evidence)
• NCBI Gene
  320032

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106775	Ensembl Gene Model | MGI Sequence Detail	2226	C57BL/6J
transcript	NR_187947	RefSeq | MGI Sequence Detail	2167	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Developmental Gene Expression 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:130568 Kurrasch DM, et al., The neonatal ventromedial hypothalamus transcriptome reveals novel markers with spatially distinct patterning. J Neurosci. 2007 Dec 12;27(50):13624-34

TSS for C130093G08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55163	Chr6:23251157-23251161 (+)	27 bp