rs37553158 SNP Detail

Summary

• ID
  rs37553158
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:59034795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAAAGC AGCAGGAGCA
  GAGAGCTAAG AGGTCCTATC TCAGCTACAT CACAGGAAGC AGAGAGGGGG AACTGGAACT
  GGGGCAAGCC TACAAGCTCT CAGAGCACCC TCTGCAGCGT ACTTCCTCCT GTAGGGCAAA
  GAGCATCGCC GAAGAGCTGA TCACCAACAC CAACTAGGTG TTCAGATACA TGAGACCATA
  K
  CGCACATTTT TCATCCAAAC TAGCATAGTG TCTTAAAAGT GGTTTGTAAT TGAATTTGTA
  ATAAACTGGG GTCTATGTCA GTTGGTTTTC TTCATCTATA TGACTATATA GATTGGAAGT
  TACTGTAAAA TGATTGTCTT CAGTCTAAAT AGGCAGTTAG AAGCAATTCT GTTCATGTTT
  GTTGGCTATA CCTCTGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51261666	NES14277535	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs37553158					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51261666	NES14277535	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59034795 () rs orientation: forward

Symbol	Name	Function Class
C2cd6	C2 calcium dependent domain containing 6	1480 bp downstream
Gm55816	predicted gene, 55816	1487 bp downstream
Rr411548	regulatory region 411548	1671 bp distal
Stradb	STE20-related kinase adaptor beta	mRNA-UTR