Gm55816 Gene Detail

Summary

• Symbol
  Gm55816
• Name
  predicted gene, 55816

• Feature Type
  lncRNA gene
• IDs
  MGI:6848098
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:59036282-59042698 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6848098	lncRNA gene	Chr1:59036282-59042698 (-)
129S1/SvImJ	ENSMUSG00200019120	lncRNA gene	Chr1:56535244-56541760 (-)
A/J	ENSMUSG00195031184	lncRNA gene	Chr1:56073173-56079680 (-)
AKR/J	ENSMUSG00220040899	lncRNA gene	Chr1:56163362-56169866 (-)
BALB/cJ	ENSMUSG00180014689	lncRNA gene	Chr1:56314479-56320992 (-)
C3H/HeJ	ENSMUSG00175001201	lncRNA gene	Chr1:56450646-56457149 (-)
C57BL/6NJ	ENSMUSG00215033706	lncRNA gene	Chr1:56382452-56388955 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037023	pseudogene	Chr1:52718799-52727456 (-)
CAST/EiJ	ENSTCUG00005013806	lncRNA gene	Chr1:56226051-56232541 (-)
CBA/J	ENSMUSG00210054119	lncRNA gene	Chr1:56135503-56142010 (-)
DBA/2J	ENSMUSG00185055251	lncRNA gene	Chr1:57255205-57261716 (-)
FVB/NJ	ENSMUSG00205027348	lncRNA gene	Chr1:56096486-56102989 (-)
JF1/MsJ	ENSUMUG00000045360	lncRNA gene	Chr1:56217297-56223786 (-)
LP/J	ENSMUSG00230030087	lncRNA gene	Chr1:57255779-57262295 (-)
NOD/ShiLtJ	ENSMUSG00190040788	lncRNA gene	Chr1:56295570-56302082 (-)
NZO/HlLtJ	ENSMUSG00225009149	lncRNA gene	Chr1:60462796-60469313 (-)
PWK/PhJ	ENSLUMG00010026994	lncRNA gene	Chr1:55735875-55742372 (-)
SPRET/EiJ	ENSMSPG00010026660	lncRNA gene	Chr1:57680393-57687091 (-)
WSB/EiJ	ENSIUOG00005021595	lncRNA gene	Chr1:55920605-55927115 (-)

Homology

• Gene Tree
  Gm55816
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000047383 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000047383	Ensembl Gene Model | MGI Sequence Detail	6417	C57BL/6J
transcript	ENSMUST00000054653	Ensembl | MGI Sequence Detail	878	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm55816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11805	Chr1:59042694-59042699 (-)	1 bp