rs3682381 SNP Detail

Summary

• ID
  rs3682381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93811489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAC CGAGTACCCA GCCGATCCCA
  K
  CAGGCTGGGC CAGCGCCCCG GCAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J
ss5058423	WI_WGS_2_94964773	WI	MOUSE	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J
rs3682381					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93811489 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alkbh3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase			Intron
				Noncoding-Transcript-Variant
Alkbh3os1	alkB homolog 3, opposite strand 1			within coordinates
Gm27027	predicted gene, 27027			Intron
Rr561320	regulatory region 561320			1875 bp distal
Rr561321	regulatory region 561321			1130 bp distal
Rr561322	regulatory region 561322			1020 bp distal
Rr561323	regulatory region 561323			1050 bp proximal