Alkbh3os1 Gene Detail

Summary

• Symbol
  Alkbh3os1
• Name
  alkB homolog 3, opposite strand 1
• Synonyms
  4921507L20Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1918102
  NCBI Gene: 70852
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:93810379-93813920 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.62 cM, cytoband E1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918102	antisense lncRNA gene	Chr2:93810348-93813928 (+)
129S1/SvImJ	ENSMUSG00200054140	lncRNA gene	Chr2:90719175-90722716 (+)
A/J	ENSMUSG00195053748	lncRNA gene	Chr2:90854435-90857976 (+)
AKR/J	ENSMUSG00220053091	lncRNA gene	Chr2:90648428-90651967 (+)
BALB/cJ	ENSMUSG00180054897	lncRNA gene	Chr2:90754317-90757858 (+)
C3H/HeJ	ENSMUSG00175054160	lncRNA gene	Chr2:91012792-91016331 (+)
C57BL/6NJ	ENSMUSG00215053859	lncRNA gene	Chr2:90855202-90858743 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013579	unclassified non-coding RNA gene	Chr2:88097256-88101095 (+)
CAST/EiJ	ENSTCUG00005052797	lncRNA gene	Chr2:90274607-90278162 (+)
CBA/J	ENSMUSG00210002192	lncRNA gene	Chr2:91026678-91030219 (+)
DBA/2J	ENSMUSG00185057291	lncRNA gene	Chr2:90750604-90754145 (+)
FVB/NJ	ENSMUSG00205053164	lncRNA gene	Chr2:90034824-90038363 (+)
JF1/MsJ	ENSUMUG00000037663	lncRNA gene	Chr2:90583938-90587492 (+)
LP/J	ENSMUSG00230000966	lncRNA gene	Chr2:92501217-92504758 (+)
NOD/ShiLtJ	ENSMUSG00190051507	lncRNA gene	Chr2:90829202-90832743 (+)
NZO/HlLtJ	ENSMUSG00225053382	lncRNA gene	Chr2:100417141-100420681 (+)
PWK/PhJ	ENSLUMG00010052752	lncRNA gene	Chr2:90545178-90548732 (+)
SPRET/EiJ	ENSMSPG00010009221	lncRNA gene	Chr2:92528080-92532136 (+)
WSB/EiJ	ENSIUOG00005053469	lncRNA gene	Chr2:90549736-90553275 (+)

Homology

• Gene Tree
  Alkbh3os1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving Alkbh3os1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000027196 (Evidence)
• NCBI Gene
  70852

Representative Sequences			Length	Strain/Species
genomic	70852	NCBI Gene Model | MGI Sequence Detail	3542	C57BL/6J
transcript	NR_045827	RefSeq | MGI Sequence Detail	1550	C57BL/6
polypeptide	Q9D5Y2	UniProt | EBI | MGI Sequence Detail	146	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 20

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087