rs36254022 SNP Detail

Summary

• ID
  rs36254022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55932543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CACAACCCTG TACGAGTCAA GTCGGGCTCA CTGTTTGCTA CAGCATCGGA
  R
  GCATTGCAGG CAAGACTGAG CAAGATTAAG TAAGTACCTG CAAGACTCAG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51120291	NES14344939	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36254022					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51120291	NES14344939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55932543 () rs orientation: forward

Symbol	Name	Function Class
4930451E10Rik	RIKEN cDNA 4930451E10 gene	262 bp upstream
Catsper3	cation channel, sperm associated 3	Coding-Synonymous
Tssr119985	transcription start site region 119985	166 bp downstream
Tssr119986	transcription start site region 119986	131 bp downstream
Tssr119987	transcription start site region 119987	110 bp downstream
Tssr122724	transcription start site region 122724	257 bp upstream
Tssr122725	transcription start site region 122725	220 bp upstream