4930451E10Rik MGI Mouse Gene Detail - MGI:1925361

Symbol

4930451E10Rik
Name

RIKEN cDNA 4930451E10 gene

Feature Type

lncRNA gene
IDs

MGI:1925361
NCBI Gene: 78111
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr13:55922948-55932281 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 13, 30.06 cM
Mapping Data

1 experiment

SNPs within 2kb

255 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925361	lncRNA gene	Chr13:55922944-55932343 (-)
129S1/SvImJ	ENSMUSG00200016632	protein coding gene	Chr13:52795530-52805047 (-)
129S1/SvImJ	ENSMUSG00200017123	lncRNA gene	Chr13:52795654-52805035 (-)
A/J	ENSMUSG00195040248	protein coding gene	Chr13:52261140-52265945 (-)
A/J	ENSMUSG00195045677	lncRNA gene	Chr13:52261264-52265939 (-)
AKR/J	ENSMUSG00220041913	protein coding gene	Chr13:51802866-51812380 (-)
AKR/J	ENSMUSG00220045688	lncRNA gene	Chr13:51802990-51812374 (-)
BALB/cJ	ENSMUSG00180016254	protein coding gene	Chr13:52512407-52517218 (-)
BALB/cJ	ENSMUSG00180018051	lncRNA gene	Chr13:52512531-52517206 (-)
C3H/HeJ	ENSMUSG00175036959	protein coding gene	Chr13:52298681-52303491 (-)
C3H/HeJ	ENSMUSG00175042742	lncRNA gene	Chr13:52298805-52303479 (-)
C57BL/6NJ	ENSMUSG00215033093	protein coding gene	Chr13:52324952-52334473 (-)
C57BL/6NJ	ENSMUSG00215041204	lncRNA gene	Chr13:52325076-52334461 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002823	antisense lncRNA gene	Chr13:51170494-51176137 (-)
CAST/EiJ	ENSTCUG00005040205	lncRNA gene	Chr13:52717226-52722264 (-)
CBA/J	ENSMUSG00210043757	lncRNA gene	Chr13:52503771-52508444 (-)
CBA/J	ENSMUSG00210030755	protein coding gene	Chr13:52503647-52508456 (-)
DBA/2J	ENSMUSG00185018597	lncRNA gene	Chr13:53346972-53356353 (-)
DBA/2J	ENSMUSG00185016257	protein coding gene	Chr13:53346848-53356359 (-)
FVB/NJ	ENSMUSG00205045150	lncRNA gene	Chr13:52149666-52159051 (-)
FVB/NJ	ENSMUSG00205036758	protein coding gene	Chr13:52149542-52159057 (-)
JF1/MsJ	ENSUMUG00000042427	lncRNA gene	Chr13:52739225-52743898 (-)
LP/J	ENSMUSG00230035265	lncRNA gene	Chr13:62691369-62696039 (-)
LP/J	ENSMUSG00230032772	protein coding gene	Chr13:62691245-62696051 (-)
NOD/ShiLtJ	ENSMUSG00190021599	protein coding gene	Chr13:52389786-52399295 (-)
NOD/ShiLtJ	ENSMUSG00190035455	lncRNA gene	Chr13:52389910-52399289 (-)
NZO/HlLtJ	ENSMUSG00225035233	lncRNA gene	Chr13:56418762-56428142 (-)
NZO/HlLtJ	ENSMUSG00225032868	protein coding gene	Chr13:56418638-56428154 (-)
PWK/PhJ	ENSLUMG00010025238	lncRNA gene	Chr13:51609349-51612973 (-)
SPRET/EiJ	ENSMSPG00010042372	lncRNA gene	Chr13:52033931-52038658 (-)
WSB/EiJ	ENSIUOG00005025657	lncRNA gene	Chr13:51822436-51827109 (-)

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Gene Tree

4930451E10Rik

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Phenotype Summary

3 phenotype references

All Mutations and Alleles

1
Chemically induced (other)

1
Genomic Mutations

1 involving 4930451E10Rik
Find Mice (IMSR)

0 strains or lines available

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

4

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

52
RefSeq

3
UniProt

1

Ensembl

ENSMUSG00000069223 (Evidence)
NCBI Gene

78111

			Length	Strain/Species	Flank
genomic	78111	NCBI Gene Model \| MGI Sequence Detail	9334	C57BL/6J	± kb
transcript	NR_167713	RefSeq \| MGI Sequence Detail	523	C57BL/6
polypeptide	Q8C1G9	UniProt \| EBI \| MGI Sequence Detail	63	Not Applicable

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UniProt

1 Sequence

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All nucleic 4

cDNA 4

Summaries

All 13

Phenotypes 3
Earliest

J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
Latest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930451E10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122725	Chr13:55932315-55932323 (-)	-38 bp
Tssr122724	Chr13:55932276-55932286 (-)	0 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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